Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1060 ATGGAGCAGTCAGCAGGGAAATCACCGAAGAAATCACCACTCAAACCGTTTCCCAGAGATCCACGTGGCTCCCTCGAAGTCTTTAACCCTGCCTCCTCCTACTCCACCGCATCCGCAGCGGGTAATCCTACCGGCTCGCCGGCGGCGGCGCGTCCTCAGCCTATATGGAAAACCTGGGCGGCAGAGCAGCAGCTGCCACGCAGTAACTCCTTGGAGGAGCTGACCACCACTGCCGCCACGTCCACAACAACCACTGCCACCTCCTGGATGGCACTTAAGGAACCCATTCCGCTGGCGAGTTCGGAGTCTGGTGCGGCAGCGCAGAGAGCTGCAGAGTGGGGATTAGTACTGAAAACGGACACGGAGACCGGGAAGCCTCAGGGAGTGGCGGTTCGAAACTCTGACGGCGGCGGTTCGTCCCGGAGGAACTCGAAAAACTCAGCTCGCACCTCCGGCGACTCCTCGGAGGAAGCGGAATCGCGCGGGATCCCGAGAGTCTCGGAGGACCTGAAGAACGCCCTTTCGGCGTTTCAACAAACTTTCGTGGTTTCTGATGCTACCAAAGCCGATTACCCGATCCTTTACGCCAGTGCCGGGTTCTTCAAGATGACTGGTTACACCTCCAAGGAGGTGATAGGTAGAAACTGTCGGTTTTTACAGGGTGCGGAAACGGATCCGGATGACGTGTCAAGGATAAGGGAAGCATTGGAAGCTGGGAAGAGTTACTGTGGAAGGTTGCTGAATTACAAGAAGGATGGGACGCCCTTCTGGAATCTTCTTACTATTTCACCCATCAAGGACGAGGATGGCAAAGTCATCAAATTCATCGGAATGCAAGTGGAGGTTAGCAAGCACACGGAGGGGGCCAAGGAGAAGGCGTTACGTCCCAATGGCTTGCCTGAATCATTGATTCGATATGATGCACGGCAAAAAGAGAATGCTACAACTTCAGTATCGGAGTTGGTGAGTGCCATAAAGCGTCCTCGAGCACTCAGTGAATCAACAAACCGCCGTCCCTTCATCAGAAATTCATCCGGAGGCGCTGACCGTCATCAACAAGAAGAGGCAGAGAACAAAACAGAGAAAACATCAAGGAGAAAATCTGAGAGCGTAGCTTCATCTGCTAGACGCAAATCACAAGGAGAAGGAGGACATGGATTAACTTCATTGCAGCAAATCAGTGAGCTCCCTGAAAAGAAGCAGAAAAACTCCCGTCGCCGTTCTTTCATGGGGTTCATGAAGAAAAATCAGGCAAATGAAGAAAGCATAGATAACGAAGGTGTTGAGGAAGTGAGCTCAGAGAGTGAGGATGATGATGACAGACCTGATAGTTTTGAATTTGAGGGCAAAGAGATCCAAAGGGAGAAGAGGAAGGGTCTTGATCTTGCCACCACACTTGAACGTATTGAGAAAAACTTTGTCATCACTGATCCTAGGCTCCCTGACAATCCCATTATATTTGCTTCTGACAGCTTCTTAGAGCTTACTGAATATAGTCGTGAAGAAATCTTGGGCAAAAATTGCAGATTTCTTCAAGGACCTGAAACAGATCCAGCAACTGTGAAAAAAATTAGACAAGCGATTGACAACCAAACTGAAGTTACTGTACAACTCATTAATTATACAAAGACAGGTAAAAAGTTCTGGAACTTGTTCCATCTGCAACCTATGCGTGACCAGAAGGGAGAAGTACAGTATTTTATTGGTGTTCAACTCGACGGTAGCCAACATGTGGAGCCTCTTCACAACTGCATCGCAGAAAATACTGCAAAAGAAGGAGAACAACTGGTCAAACAAACTGCAGAAAATGTTGATGAGGCAGTAAGAGAACTTCCGGATGCTAATATGAAACCGGACGATTTATGGATGAATCATTCAAAAGTGGTTCAGCCAAAACCTCATAGGAAGGAAGATGCTGCTTGGAGAGCTATCAAGAAGATCCTGGACAGTGGAGAACAGATAGGCTTAAAGCACTTTAGGCCAGTTAAACCTTTGGGATCAGGAGATACTGGCAGTGTGCATCTAGTGGAGCTATGTGGAACTGGTCACCATTTTGCCATGAAGGCGATGGATAAGGGTGTTATGCTCAATCGTAACAAGGTGCATAGAGCTTGCACAGAGAGAGAAATCCTTGACATGTTGGACCATCCTTTTCTACCTGCACTATATGCTTCCTTTCAGACCAAATCACATGTTTGTTTGATAACTGATTACTGCCCTGGTGGAGAACTGTTCCTGCTTCTTGATCGACAGCCAACAAAAGTTCTTAAGGAAGAGGCTGCCAGATTTTATGCTGCTGAGGTAGTGGTTGCATTGGAGTATCTTCATTGTCAAGGAATAATATATCGGGATTTGAAGCCAGAAAATGTGTTAATCCAGAGCAATGGACATGTGGCTCTAACAGATTTTGATTTGTCATGTTTAACATCTTGCAAGCCACAGCTGCTTCTACCAGCCACGGATGACAAGAAAAAAAAGAAGAAAAAACAACAAAAAGGTCAACAGGTTCCGGTGTTTATGGCTGAACCCATGAGGGCATCAAATTCTTTTGTTGGCACAGAAGAGTACATAGCTCCGGAAATTATATCTGGTTCAGGCCACACTAGTGCTGTGGATTGGTGGGCTCTTGGTGTTCTTCTATATGAAATGCTTTATGGGTATACACCATTCAGGGGAAAGACAAGGCAAAAAACATTTGCAAATATTCTACACAAGGATCTTAAATTTCCCAAAAGCAAACCAGTAAGTCTCCAGGGAAAGCAGCTAATTTATTGGTTGTTGCAAAGAGATCCCAAAGATAGATTGGGTTCACAAGAAGGAGCAAATGAAATTAAGCGTCATCCATTCTTTAAGTCTGTTAATTGGGCATTAGTCCGGTGCATGACACCTCCTGAACTTGATGCTCCTCTCTCGCTGGAAAATGAAGTCAAAGTGGACCCTGAATTGGAGGATATGCAGCTAACTGTTTTCTGA 2973 0.4659 MEQSAGKSPKKSPLKPFPRDPRGSLEVFNPASSYSTASAAGNPTGSPAAARPQPIWKTWAAEQQLPRSNSLEELTTTAATSTTTTATSWMALKEPIPLASSESGAAAQRAAEWGLVLKTDTETGKPQGVAVRNSDGGGSSRRNSKNSARTSGDSSEEAESRGIPRVSEDLKNALSAFQQTFVVSDATKADYPILYASAGFFKMTGYTSKEVIGRNCRFLQGAETDPDDVSRIREALEAGKSYCGRLLNYKKDGTPFWNLLTISPIKDEDGKVIKFIGMQVEVSKHTEGAKEKALRPNGLPESLIRYDARQKENATTSVSELVSAIKRPRALSESTNRRPFIRNSSGGADRHQQEEAENKTEKTSRRKSESVASSARRKSQGEGGHGLTSLQQISELPEKKQKNSRRRSFMGFMKKNQANEESIDNEGVEEVSSESEDDDDRPDSFEFEGKEIQREKRKGLDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGKNCRFLQGPETDPATVKKIRQAIDNQTEVTVQLINYTKTGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHVEPLHNCIAENTAKEGEQLVKQTAENVDEAVRELPDANMKPDDLWMNHSKVVQPKPHRKEDAAWRAIKKILDSGEQIGLKHFRPVKPLGSGDTGSVHLVELCGTGHHFAMKAMDKGVMLNRNKVHRACTEREILDMLDHPFLPALYASFQTKSHVCLITDYCPGGELFLLLDRQPTKVLKEEAARFYAAEVVVALEYLHCQGIIYRDLKPENVLIQSNGHVALTDFDLSCLTSCKPQLLLPATDDKKKKKKKQQKGQQVPVFMAEPMRASNSFVGTEEYIAPEIISGSGHTSAVDWWALGVLLYEMLYGYTPFRGKTRQKTFANILHKDLKFPKSKPVSLQGKQLIYWLLQRDPKDRLGSQEGANEIKRHPFFKSVNWALVRCMTPPELDAPLSLENEVKVDPELEDMQLTVF* 991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1060 990 MobiDBLite consensus disorder prediction 348 373 - -
Amo08g1060 990 ProSiteProfiles PAC domain profile. 532 586 IPR000700 -
Amo08g1060 990 CDD PAS 193 282 IPR000014 -
Amo08g1060 990 ProSiteProfiles PAS repeat profile. 458 531 IPR000014 -
Amo08g1060 990 SMART pas_2 460 529 IPR000014 -
Amo08g1060 990 SMART pas_2 168 237 IPR000014 -
Amo08g1060 990 MobiDBLite consensus disorder prediction 62 83 - -
Amo08g1060 990 MobiDBLite consensus disorder prediction 28 43 - -
Amo08g1060 990 SUPERFAMILY Protein kinase-like (PK-like) 646 969 IPR011009 -
Amo08g1060 990 MobiDBLite consensus disorder prediction 133 151 - -
Amo08g1060 990 Pfam Protein kinase domain 662 950 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo08g1060 990 MobiDBLite consensus disorder prediction 423 444 - -
Amo08g1060 990 Gene3D Phosphorylase Kinase; domain 1 658 742 - -
Amo08g1060 990 Gene3D PAS domain 180 338 - -
Amo08g1060 990 Pfam PAS domain 481 573 IPR000014 -
Amo08g1060 990 Pfam PAS domain 189 283 IPR000014 -
Amo08g1060 990 Gene3D Transferase(Phosphotransferase) domain 1 743 963 - -
Amo08g1060 990 ProSitePatterns Serine/Threonine protein kinases active-site signature. 780 792 IPR008271 GO:0004672|GO:0006468
Amo08g1060 990 MobiDBLite consensus disorder prediction 1 83 - -
Amo08g1060 990 Gene3D PAS domain 447 611 - -
Amo08g1060 990 SUPERFAMILY PYP-like sensor domain (PAS domain) 187 279 IPR035965 -
Amo08g1060 990 MobiDBLite consensus disorder prediction 119 164 - -
Amo08g1060 990 TIGRFAM sensory_box: PAS domain S-box protein 192 287 IPR000014 -
Amo08g1060 990 TIGRFAM sensory_box: PAS domain S-box protein 483 573 IPR000014 -
Amo08g1060 990 ProSiteProfiles PAC domain profile. 240 294 IPR000700 -
Amo08g1060 990 ProSitePatterns Protein kinases ATP-binding region signature. 665 688 IPR017441 GO:0005524
Amo08g1060 990 ProSiteProfiles PAS repeat profile. 166 237 IPR000014 -
Amo08g1060 990 PANTHER FLIPPASE KINASE 1-RELATED 116 990 - -
Amo08g1060 990 PANTHER PHOTOTROPIN-1 116 990 - -
Amo08g1060 990 SMART pac_2 243 285 IPR001610 -
Amo08g1060 990 SMART pac_2 535 577 IPR001610 -
Amo08g1060 990 MobiDBLite consensus disorder prediction 329 456 - -
Amo08g1060 990 CDD PAS 473 573 IPR000014 -
Amo08g1060 990 SUPERFAMILY PYP-like sensor domain (PAS domain) 474 573 IPR035965 -
Amo08g1060 990 Coils Coil 590 610 - -
Amo08g1060 990 ProSiteProfiles Protein kinase domain profile. 659 950 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo08g1060 990 CDD STKc_phototropin_like 657 974 - -
Amo08g1060 990 SMART serkin_6 659 950 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1060 Amo-Chr8 17961492 17969328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1060 17 990 AGC Kinase Gene Family AT3G45780 68.911 0.0 1345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Amo08g1060 Pkinase 6.2e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1060 K20715 - gmx:100817565 1495.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g1060 08 17961492 17969328 Amo13g0361 13 4880056 4889236 PCT
Amo13g0361 13 4880056 4889236 Amo08g1060 08 17961492 17969328 PCT