Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1054 ATGTACACACGCGCCACCTCATCATCAACTTTTCTCTCGCCGGATTATCCCCCAGTGCACCCGTTCCCGGACGAACTGGCCCTCACGGAGTTGGAATCGCTTCTGAACTGCAACAACTCGGAGATAGTAAGCTTCAACAAGAGTAGTAGCAGCGGTAGTTACAATAGTGAGCATGGGTCGGTGATGCAGAGGAGCGTTAGCAGCAACTCTCTCCATAAGAATCCCTTCTCTGCTCTCTTGGCTGAGTTGTTCGACGACGACGCTCCTCTTAGGAGAGTTTGCAGCACCGGTGATCTCCACGGGACTACTCATGGCGGCATCATGCATAACAATAATGAATCAGCTGATAGTCCATTGTCAAGTGAAAGCAGCATGATCATTGAAGGAATGAGTAGAGCATGTAGGTATAGCCCTGAGGAGAAGAAACTCAGGATTGAGAGGTATAGAACCAAGAGAAACCAAAGAAACTTCAACAAGAAAATTAAGTATGTTTGCAGGAAGACTTTAGCAGACAGCAGGCCGCGCATTAGAGGACGATTCGCGAGGAACGACGAAATTGACAAGAATCCTTCATCAGTTCATCAATGGAGTCATCACATTGGTGCTGGAGCAGAGGAAGACCAAGAAGATCAAAACTGGGTCAGTATCTTTGATTCACTAGTTGCTGCAAATACTGATCATCAAGAGTCCCAGGACAGTTCTTCTTTCGGTTTATTGTATTAG 723 0.4661 MYTRATSSSTFLSPDYPPVHPFPDELALTELESLLNCNNSEIVSFNKSSSSGSYNSEHGSVMQRSVSSNSLHKNPFSALLAELFDDDAPLRRVCSTGDLHGTTHGGIMHNNNESADSPLSSESSMIIEGMSRACRYSPEEKKLRIERYRTKRNQRNFNKKIKYVCRKTLADSRPRIRGRFARNDEIDKNPSSVHQWSHHIGAGAEEDQEDQNWVSIFDSLVAANTDHQESQDSSSFGLLY* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1054 240 ProSiteProfiles CCT domain profile. 141 183 IPR010402 GO:0005515
Amo08g1054 240 Pfam CCT motif 143 183 IPR010402 GO:0005515
Amo08g1054 240 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 24 240 IPR045281 GO:0009909
Amo08g1054 240 PANTHER CCT MOTIF PROTEIN 24 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1054 Amo-Chr8 17906099 17907545 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1054 137 188 C2C2-CO-like Transcription Factor Family AT5G15850 46.154 2.52e-11 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Amo08g1054 CCT 2.6e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1054 - - gmx:102661609 256.529