Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1051 ATGATGAATTACAGAAAACTTTCTTTGTTTTTCTGTGCTTTATCTATCTTTTATCCCTATCTGTGTTTCTCTGCCGATTTTGTTCCAGTAGATAACTACCTTATAGATTGTGGAGCAAGTTCTGGTACTGTAGTAGGTAACCGCAATTTCTCTGCGGATAGTGCTTCTAAGAAGCTATTATCCACTCAGCAAGATGTTCTTGCAAGTACTTCCTTGAAATCAATCACTTCCACTGGTGATTCCACTCTCTATCAAACTGCTAGGGTCTTCACTGGTTCCTCAAAGTACACTTTCTCAATCAAACAAAAAGGCAGACATTGGATCCGTCTTTATTTCTTTCCATTTACCTATCAGAAGTATGATATGAGTGCAGCGAAATTCTCGGTTGCCACGCAGAACAATGTCCTTGTTAGTGATTTTGGTGTGCAGAAAGATCCTGTGATGAAGGAATACTCTGTGAATGTGAGCTCTAATTCCCTTGTTATAGACTTTACCCCTTCGAGTGGTTCGATTGCCTTTGTGAATGCAATCGAAGTTGTTTCGGTCCCTGATGACCTCATTGATGATGTTGGTTTCAGCCTGACTAATGGATTATCAAGCTACTCTGGCTTGGCAGTACAGGCGCTGGAGACAGTCTGGAGGGTTAACATGGGGGGTCCAACTGTCTCCTCTGGTAATGACACTCTTCAGCGAACCTGGGATCCGGATCTTAGCTTCCTAAAAGAAAAAAACCTTGCTGCTAATTTCTCAAATATTGGAGGTGTTCAATATGTGAACGGCTCGGCTACTGAAAATGATGCTCCGGCTAGTGTTTATGGTACTGGACAACAGATGAACTCACAAAGTGATCCACGTGTTAATTTCAATGTGACATGGGAGTTTAAGGTGGATTCTGGATTTCAGTACCTTGTTAGACTTCACTTCTGTGATTTAGTGAGTAAAGGTCTCAATGAACTCTACTTCAATGTTTATGTTGATTCCTTGTTTGCTGCCAAGGATCTTGATCTTGCTTCAATAAATCAAAATGTCTTGGGTGTTCCATATTATAGGGATGTTGTTACACCCTTGACATCTAGCAACTTGCTTCGAGTAAGTATGGGACCTTCTAATGTAAATAAGGACTACCCTAATGCCATTCTGAATGGTTTGGAGATCATGAAAATGAACAATTCTGTGGGAAGTCTTAGTACAGGGACAGCTGCTGTTGCTACTACTTCTGGTTCAAATTCAAAGAATGTTGGTGTAATTGTGGGTGCAGTTCTTGGGGCAGTATGTGCAGTGGTCTTGGCTGGACTTTTGTGTTTACTATGCAGGAAAAGAAGGCGGTTGGCGCGGCGGAGACAGTCGAAGACATGGATTCCTTTCTCCATCAATGGCACAACTTCTCACACCATGGGAAGTAAATATTCTAATGGTACTACAATTAGTGCTGCTTCAAACTTCGAGTACCGTGTTCCTCTTGCTGCAGTTCAGGAAGCTACAAACAATTTTGATGAGAGTTGGGTTATTGGGATTGGTGGCTTTGGGAAAGTATACAAGGGGGAATTGAGTGATGGCACTAAAGTGGCAGTTAAGAGAGGAAATCCTCGGTCACAGCAGGGTATTGCCGAGTTCCGAACTGAAATCGAAATGCTGTCTCAGTTCCGTCACCGGCATCTGGTATCTTTGATCGGCTATTGTGATGAAAGGAATGAAATGATACTGATATATGAGTATATGGAGAAAGGAACACTCAAGGGTCATCTATATGGTTCGGGGTTCCCAACCTTAAGTTGGAAGGAGAGGCTTGAGATATGCATTGGAGCTGCTAGAGGGCTTCATTATCTGCACACCGGCTATGCTAAAGCAGTTATTCACCGCGATGTGAAATCTGCAAATATCCTCCTTGATGAGAACCTGATGGCTAAAGTTGCTGATTTTGGATTATCCAAGACTGGGCCAGAACTTGATCAGACACATGTGAGCACAGCTGTTAAAGGAAGCTTTGGCTACCTTGATCCTGAATACTTCAGGAGGCAGCAGCTAACAGAAAAGTCTGATGTGTATTCATTCGGCGTGGTTCTGTTTGAAGTTCTTTGTGCAAGACCTGTCATAGATCCGTCCCTTCCCAGGGAGATGGTAAACTTGGCAGAATGGGCAATGAAGTGGCAGAAGAAGGGGCAATTGGAGGAGATCATAGATCCTGCACTTGCAAGCAACATAAGACCGGAATCTCTCAGGAAGTTTGGAGAAACCGCGGAGAAATGCTTGGCAGACTTCGGTGTAGACAGGCCTTCTATGGGAGATGTATTGTGGAATTTGGAGTATGCCCTGCAGCTTCAAGAGTCTGCTACTCAAGGGAATGATCCTCAAGAAAACAGTACTAATATGATCAGTCTCTCTCCACAGGTCAACAACTTCAACAACGATGCAAGCGCCTCTGCCATTAAATTTGAAGGCACAAATGTGGATGATCTGTCTGGTGTTTCAATGAGTAGGGTGTTCTCTCAGTTGGTGAAGTCAGAGGGGAGATGA 2514 0.4332 MMNYRKLSLFFCALSIFYPYLCFSADFVPVDNYLIDCGASSGTVVGNRNFSADSASKKLLSTQQDVLASTSLKSITSTGDSTLYQTARVFTGSSKYTFSIKQKGRHWIRLYFFPFTYQKYDMSAAKFSVATQNNVLVSDFGVQKDPVMKEYSVNVSSNSLVIDFTPSSGSIAFVNAIEVVSVPDDLIDDVGFSLTNGLSSYSGLAVQALETVWRVNMGGPTVSSGNDTLQRTWDPDLSFLKEKNLAANFSNIGGVQYVNGSATENDAPASVYGTGQQMNSQSDPRVNFNVTWEFKVDSGFQYLVRLHFCDLVSKGLNELYFNVYVDSLFAAKDLDLASINQNVLGVPYYRDVVTPLTSSNLLRVSMGPSNVNKDYPNAILNGLEIMKMNNSVGSLSTGTAAVATTSGSNSKNVGVIVGAVLGAVCAVVLAGLLCLLCRKRRRLARRRQSKTWIPFSINGTTSHTMGSKYSNGTTISAASNFEYRVPLAAVQEATNNFDESWVIGIGGFGKVYKGELSDGTKVAVKRGNPRSQQGIAEFRTEIEMLSQFRHRHLVSLIGYCDERNEMILIYEYMEKGTLKGHLYGSGFPTLSWKERLEICIGAARGLHYLHTGYAKAVIHRDVKSANILLDENLMAKVADFGLSKTGPELDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLCARPVIDPSLPREMVNLAEWAMKWQKKGQLEEIIDPALASNIRPESLRKFGETAEKCLADFGVDRPSMGDVLWNLEYALQLQESATQGNDPQENSTNMISLSPQVNNFNNDASASAIKFEGTNVDDLSGVSMSRVFSQLVKSEGR* 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1051 837 SUPERFAMILY Protein kinase-like (PK-like) 474 768 IPR011009 -
Amo08g1051 837 ProSitePatterns Protein kinases ATP-binding region signature. 503 525 IPR017441 GO:0005524
Amo08g1051 837 Gene3D - 32 183 - -
Amo08g1051 837 Gene3D - 207 390 - -
Amo08g1051 837 ProSiteProfiles Protein kinase domain profile. 497 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo08g1051 837 SMART serkin_6 497 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo08g1051 837 PANTHER RECEPTOR-LIKE PROTEIN KINASE HERK 1 19 805 - -
Amo08g1051 837 PANTHER OS07G0166700 PROTEIN 19 805 IPR045272 GO:0004714|GO:0006468
Amo08g1051 837 Pfam Malectin-like domain 35 388 IPR024788 -
Amo08g1051 837 CDD STKc_IRAK 503 768 - -
Amo08g1051 837 Pfam Protein tyrosine and serine/threonine kinase 502 696 IPR001245 GO:0004672|GO:0006468
Amo08g1051 837 ProSitePatterns Serine/Threonine protein kinases active-site signature. 617 629 IPR008271 GO:0004672|GO:0006468
Amo08g1051 837 Gene3D Phosphorylase Kinase; domain 1 458 572 - -
Amo08g1051 837 Gene3D Transferase(Phosphotransferase) domain 1 573 794 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1051 Amo-Chr8 17878952 17881465 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1051 11 837 Receptor kinase-like Gene Family AT3G46290 65.431 0.0 1090
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Amo08g1051 Malectin_like 1.7e-40 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1051 - - gmx:100806488 1232.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0205 18 2924223 2927672 Amo08g1051 08 17878952 17881465 hybridization
Amo08g1051 08 17878952 17881465 Amo13g0370 13 5055381 5058598 PCT
Amo13g0370 13 5055381 5058598 Amo08g1051 08 17878952 17881465 PCT