Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1040 ATGGACTCAGCTTCATTCTTCCCTCATCCTTTGATTGGCCACGTCATCACCAGCTCAAGCTTGCAACAACGATCATATAGCAGCCATCATAATAATCACAGTGGGAGATTTGGCATATGGAGGAACAACAGGTTGTTGAATTCAGCTTCTTGTGCTATTGGATATGAATTCTTTGATGAAAATGGTAACTTGAAAAGGAACAATGAAAATGGGTCCCTCTTAGGTGATGCTTCAAAACAGTTTTCGTCTTCTTCTTCTTCTTCAGCACCATTTGGAACATTGAACGCTGAAATAACACAGGAAACTACTGATTTCTTTGTGAGTGATGCTGAAGGTGATCCAGATTGTCCCTCTAAGGGTTACTCTTCCATTGAGCAAGCACTTAATGCACTTCGCCAAGGAAAGTTTGTGATTGTGGTAGATGATGAAAATGGTGATGTTGAAGGAAACCTTGTAATGGCAGCATCTCTGACTAGTACCAAGGATATAGCCTTTTTGATTAGGCATGGATCAGGGATTGTTTCTGTTGGCATGAAACAAGAGGATCTTCAAAGACTCAACCTTCCTCTCATGTCACCAGAAACTGAAGATGAAGATTCTTCAGCCCCAACCTTTACTATCACAGTGGATGCAAAATTTGGAACTTCAACAGGCGTATCAGCCGCGGACAGAGCGAAAACAGTTCTTGCTCTATCATCTCCAGAGTCTAACTCAGAAGATTTTAGAAAGCCAGGTCATGTGTTTCCCTTGAAGTACAGAAATGGTGGGGTTCTAAGGAGAGCAGGTCACACTGAGGCTTCAGTTGATCTGGTTTCACTTGCTGGATTGCCACCAGTTTCTGTTCTTTCAGCTCTTGTTAATGATGAGGATGGTTCCATGTCTTCTTTGCCCACTCTAACAAACTTAGCATTGGAATACAACTTTCCTATTGTCTCAATCACTGATTTGATAAGGTACCGGAGAAAGCGCGAAGAATTGGTTGTAAGAACTTGTGTTTCAAGGTTGCCTACGAAATGGGGTGATTTTGAAGCATATTGCTACAGCTCAAAGTTAGATGGAACTGAACATGTGGCTGTTGTGAAGGGAGAGATAGGAGATGGACAAGATGTGCTAGTGAGAGTGCATTCAGAATGTTTAACTGGTGACATATTTGGATCAGCTCGGTGTGACTGTGGAAACCAACTAGATTTGGCAATGCAGTTAATAGAAGAAGCAGGAAGAGGAGTAGTTGTGTATCTTAGAGGTCATGAAGGAAGAGGCATTGGACTTGGTCACAAACTTAAAGCCTATAATTTACAGGACCAAGGACATGACACTGTCCAAGCCAACATTGAACTTGGTTTAGCCGTTGATGCTCGTGAGTATGGGATTGGAGCCCAGATTCTGAGAGACATAGGAGTTCGAACTATGCGGCTAATGACTAACAATCCAGCCAAGTTTGTTGGTCTAAAAGGGTATGGTTTGGCAGTCATAGGACGTGTTCCTGTGTTGACACCAATCACGGAGGAAAACAAGCGATACCTCGAAACTAAAAGGATAAAGATGGGTCATGTTTATGCCTCTGATTTACAAGGATCATTACCTGGATTCAACCATGATTCAACTGGTTCCACCACAGTTGATAGTTCAAAGAAGGCTGATCCAAAGGCTCAGGCCTTGAAAACTGCTAAGGCAGTGAAGTCAGGTGCTACCTTTAAGAAGAAGGCCAAGAAGATCAGAACAAAGGTCACATTCCATCGCCCTAAGACTTTGAAGAAGGATAGGAACCCCAAATACCCCCGCATTAGTGCCCCACCAAGGAACAAGCTTGACCATTATCAAATTCTGAAATACCCTCTCACAACCGAGTCGGCAATGAAGAAGATTGAAGACAACAACACTTTGGTTTTCATTGTTGACTTGCGTGCTGACAAGAAGAAGATCAAGGATGCAGTGAAGAAAATGTATGACATCCAGGCCAAGAAAGTAAACACTTTGATCAGGCCTGATGGAACCAAGAAGGCTTATGTTAGGTTGACACCTGATTATGATGCCTTGGATGTAGCAAACAAGATTGGAATCATCTAA 2067 0.4257 MDSASFFPHPLIGHVITSSSLQQRSYSSHHNNHSGRFGIWRNNRLLNSASCAIGYEFFDENGNLKRNNENGSLLGDASKQFSSSSSSSAPFGTLNAEITQETTDFFVSDAEGDPDCPSKGYSSIEQALNALRQGKFVIVVDDENGDVEGNLVMAASLTSTKDIAFLIRHGSGIVSVGMKQEDLQRLNLPLMSPETEDEDSSAPTFTITVDAKFGTSTGVSAADRAKTVLALSSPESNSEDFRKPGHVFPLKYRNGGVLRRAGHTEASVDLVSLAGLPPVSVLSALVNDEDGSMSSLPTLTNLALEYNFPIVSITDLIRYRRKREELVVRTCVSRLPTKWGDFEAYCYSSKLDGTEHVAVVKGEIGDGQDVLVRVHSECLTGDIFGSARCDCGNQLDLAMQLIEEAGRGVVVYLRGHEGRGIGLGHKLKAYNLQDQGHDTVQANIELGLAVDAREYGIGAQILRDIGVRTMRLMTNNPAKFVGLKGYGLAVIGRVPVLTPITEENKRYLETKRIKMGHVYASDLQGSLPGFNHDSTGSTTVDSSKKADPKAQALKTAKAVKSGATFKKKAKKIRTKVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII* 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1040 688 Hamap 50S ribosomal protein L23 [rplW]. 608 688 IPR013025 GO:0003735|GO:0005840|GO:0006412
Amo08g1040 688 TIGRFAM ribA: GTP cyclohydrolase II 334 518 IPR000926 GO:0003935|GO:0009231
Amo08g1040 688 SUPERFAMILY RibA-like 326 497 IPR036144 -
Amo08g1040 688 Hamap GTP cyclohydrolase-2 [ribA]. 325 521 IPR000926 GO:0003935|GO:0009231
Amo08g1040 688 Pfam 3,4-dihydroxy-2-butanone 4-phosphate synthase 125 319 IPR000422 GO:0008686|GO:0009231
Amo08g1040 688 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 605 681 IPR012678 GO:0003735|GO:0005840|GO:0006412
Amo08g1040 688 Gene3D DHBP synthase 115 326 - -
Amo08g1040 688 Gene3D GTP cyclohydrolase II 327 498 IPR036144 -
Amo08g1040 688 Gene3D - 569 688 IPR012677 -
Amo08g1040 688 Pfam Ribosomal protein L23, N-terminal domain 549 598 IPR005633 -
Amo08g1040 688 SUPERFAMILY YrdC/RibB 120 324 IPR017945 -
Amo08g1040 688 Pfam GTP cyclohydrolase II 333 495 IPR032677 -
Amo08g1040 688 ProSitePatterns Ribosomal protein L23 signature. 666 681 IPR001014 -
Amo08g1040 688 PANTHER GTP CYCLOHYDROLASE II-RELATED 1 537 - -
Amo08g1040 688 TIGRFAM ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 123 320 IPR000422 GO:0008686|GO:0009231
Amo08g1040 688 CDD GTP_cyclohydro2 326 517 IPR000926 GO:0003935|GO:0009231
Amo08g1040 688 Pfam Ribosomal protein L23 608 669 IPR013025 GO:0003735|GO:0005840|GO:0006412
Amo08g1040 688 Hamap Riboflavin biosynthesis protein RibBA [ribBA]. 120 517 IPR016299 GO:0009231
Amo08g1040 688 PANTHER MONOFUNCTIONAL RIBOFLAVIN BIOSYNTHESIS PROTEIN RIBA 3, CHLOROPLASTIC 1 537 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1040 Amo-Chr8 17709889 17713839 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1040 561 688 Cytoplasmic Ribosomal Protein Gene Family AT2G39460 91.406 9.94e-63 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1040 K14652 - gmx:100786573 870.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g1040 08 17709889 17713839 Amo13g0387 13 5221110 5223182 PCT
Amo13g0387 13 5221110 5223182 Amo08g1040 08 17709889 17713839 PCT