Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1039 ATGGAAGACCCCTTAGGTTCCATATTCAATTCCCATCACGAGAGTGCTGATGAGTTGAGACAAAAGTTGAGCCTAACAAGAATCGAACTGGAGACTTTAAGAAGCGAGAACGTGGAACTGACGAACCTTTTGAACATGGCACAACAAGAGAGAGACGAAGCGAGGAACCAGCTTCAGAAGATGATGAAAGCACTGAAAATGATGAAGGGATTTTGTGTTGACGACAACAACAACAACAAGAACAACAACCTCGTATCACTTGCCGCCATTGCTAACAACACTAAAGCAAACTCAAGCATCACAGAATCAAACAGCCTCTCACGTGTTTCTTCTCCCGTTGATGCTGTTTCTTCATCACCAGAATTCTCAAACATGAACGTTAACAACGTTGTTGACTCTGGTTGTTTCTTCTATGAGAAGCCTGATCTTGATCCTGCAGATGCATTGATTGAGTGTCTCGCCAAGGGGAAAGTGTTGCCGCAGCAGGGGAAGCTTCTTGATGCTGTGGTGGACGCAGGTCCATTGCTCCGGTCTCTCATTCCGGCGGGGCCTCTTCCCACGTTTCGAAACCCGCCGCCATTACAGGACATCAAGGTTCCACCACTTTCAGTCAAAGGACTTGATTCCAGTGGGATCATTGAGTTGGGAAATTCCTTTGCAACAACAACAAACACTTGTTCTTGGAATTCACCTTCCTCTGTTCTCAACTTCGGTGGTGGTGGTTCTTGGAACAATGTTTTGCCGTTGACTTCAAATGTTTCTGGAGTCATGAAGTGTCCTTCCTCCTCGGAAGTTAACCCTTCAAGCTCCCCTAATGATCTGCAGCATCATCAAGTTGTCATTGAGTCCTTCCCTGATATCTCTTCTCTACAAAGCGACGGCTTAGACAGCTCCGTGATAAGTTCTCTTCCGGTGTCGGAGTTCGAAAATGTGGGAGACCACAAGTCTATTAACGCAGATTGTGTCATTTGTCTCGGGGAATTTGAAAAAGGGGAGAAGCTTAAGCTGCTTCCTCAATGTGCTCATGCTTTCCATGTTTCTTGCATAGATGCATGGTTTCAGTCTCATTCAAATTGCCCACTTTGCAGGTCCCAAGTCCATCATGTTGAAGATGCTATCGCCGGGTATTCAGTGTCTTTGTATCCATTGCTGGAAACTCTGAGGAGGGAAGACTTTTCCCGAGACAGCGATGAACTAATCCGATCCGTTCGGTCCGAGGTCATACAAAGCTGGGCAAGTAGACCACACACACTGTAA 1257 0.4622 MEDPLGSIFNSHHESADELRQKLSLTRIELETLRSENVELTNLLNMAQQERDEARNQLQKMMKALKMMKGFCVDDNNNNKNNNLVSLAAIANNTKANSSITESNSLSRVSSPVDAVSSSPEFSNMNVNNVVDSGCFFYEKPDLDPADALIECLAKGKVLPQQGKLLDAVVDAGPLLRSLIPAGPLPTFRNPPPLQDIKVPPLSVKGLDSSGIIELGNSFATTTNTCSWNSPSSVLNFGGGGSWNNVLPLTSNVSGVMKCPSSSEVNPSSSPNDLQHHQVVIESFPDISSLQSDGLDSSVISSLPVSEFENVGDHKSINADCVICLGEFEKGEKLKLLPQCAHAFHVSCIDAWFQSHSNCPLCRSQVHHVEDAIAGYSVSLYPLLETLRREDFSRDSDELIRSVRSEVIQSWASRPHTL* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1039 418 SUPERFAMILY RING/U-box 320 369 - -
Amo08g1039 418 Pfam Ring finger domain 320 363 IPR001841 -
Amo08g1039 418 SMART ring_2 321 362 IPR001841 -
Amo08g1039 418 Coils Coil 16 64 - -
Amo08g1039 418 ProSiteProfiles Zinc finger RING-type profile. 321 363 IPR001841 -
Amo08g1039 418 Pfam Protein of unknown function (DUF1635) 15 214 IPR012862 -
Amo08g1039 418 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 284 369 IPR013083 -
Amo08g1039 418 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 1 353 - -
Amo08g1039 418 CDD RING-H2_PA-TM-RING 320 363 - -
Amo08g1039 418 PANTHER ENABLED-LIKE PROTEIN (DUF1635) 1 353 IPR012862 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1039 Amo-Chr8 17706933 17709309 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1039 289 374 C3H Transcription Factor Family AT5G17600 50.000 6.99e-22 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1039 - - aip:107611905 489.574
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0195 18 2811288 2814030 Amo08g1039 08 17706933 17709309 hybridization
Amo08g1039 08 17706933 17709309 Amo13g0388 13 5223584 5226294 PCT
Amo13g0388 13 5223584 5226294 Amo08g1039 08 17706933 17709309 PCT