Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1037 ATGCCGATCTCTAAAATTGTGATTGGAAATGCTTCTGAGTTGAGGCAAAGCGATGCGCTTAAGGCCGCACTTGCTGAGTTCATCTCAATGCTTATCTTTGTTTTCGCCGGACAAGGCTCCGGCATGGCTTATAATAAGTTGACAAACAATGGCGCAGCAACACCAGCTGGCGTAGTGGCAGCATCATTGTCTCACGCCTTTGCTCTCTTTGTTGCAGTCTCCGTTGCCGCCAACATCTCCGGCGGCCACGTCAACCCTGCCGTCACTTTCGGCGCTTTCATTGGTGGCCACATCACTCTCCTCAGAACCATTCTCTATTGGATTGCTCAGTTGCTTGGCTCCGTTGTTGCTTGCTTGCTCCTTAAATTCGCCACAGCCGGACTCGAAACATCTGCATTTGCACTATCTTCTGGGGTTGGAGCATCGAATGCATTGGTGTTTGAGATTGTGATGACCTTTGGTCTCGTGTACACGGTGTATGCAACTGCCGTGGACCCAAAGAAGGGTGACGTTGGGATCATTGCTCCAATTGCCATTGGCTTCATTGTGGGTGCTAACATTTTAGCCGGTGGGGCATTTGATGGTGCATCCATGAACCCAGCTGTATCTTTTGGGCCTTCTGTTGTTAGCTGGAATTGGGCCAACCACTGGGTCTACTGGGCCGGCCCATTCATTGGTTCTGCTATTGCAGCTATTGTCTACGACACTTTCTTTATTAACCACCACACTCATGAACCGCTCCCCGTCACAGATTACTAG 759 0.5007 MPISKIVIGNASELRQSDALKAALAEFISMLIFVFAGQGSGMAYNKLTNNGAATPAGVVAASLSHAFALFVAVSVAANISGGHVNPAVTFGAFIGGHITLLRTILYWIAQLLGSVVACLLLKFATAGLETSAFALSSGVGASNALVFEIVMTFGLVYTVYATAVDPKKGDVGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPSVVSWNWANHWVYWAGPFIGSAIAAIVYDTFFINHHTHEPLPVTDY* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1037 252 Pfam Major intrinsic protein 13 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo08g1037 252 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Amo08g1037 252 PANTHER AQUAPORIN-8 1 252 IPR034294 -
Amo08g1037 252 CDD MIP 21 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo08g1037 252 PANTHER MAJOR INTRINSIC PROTEIN-RELATED 1 252 - -
Amo08g1037 252 SUPERFAMILY Aquaporin-like 13 246 IPR023271 -
Amo08g1037 252 Gene3D Glycerol uptake facilitator protein. 4 252 IPR023271 -
Amo08g1037 252 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo08g1037 252 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo08g1037 252 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo08g1037 252 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo08g1037 252 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo08g1037 252 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1037 Amo-Chr8 17687511 17688878 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1037 1 252 Major Intrinsic Protein MIP AT4G01470 78.968 1.45e-142 398
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1037 K09873 - gmx:547794 441.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo18g0193 18 2797350 2798595 Amo08g1037 08 17687511 17688878 hybridization
Amo08g1037 08 17687511 17688878 Amo13g0389 13 5233861 5235299 PCT
Amo13g0389 13 5233861 5235299 Amo08g1037 08 17687511 17688878 PCT