Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1025 ATGGCAGGGAAGGGTAAGAACAACAACAACAAGGTGGATGTTGACTTTGGTTGTGGTTTGGTTGGGAGAATTCTCCAACTTAAAAGCAACAATAGGCTGAGAAAATCATCAGTTCATTCATTACCCTTGAAAGCAAGCAACAACAAAGGACAGCAGAGAGATCATAAGGTGGAAAACGAATCCAACAAGCCTCAAATTCATGAATCAAAGACTCCAAGTCCAAGAAACAGCTTCACTGAGACCTTTCACACATTGAATGATGATCATAAACAAGCCAGAAAGAGCACCTCTGCCTACCGAAACAGCCAGAATCGAAGACCTTCAGATGCTGCAAGAAGCTCAACATCATCATCATCTGGTAACTCAGAGAAGCAACACAGAGAAGCCATTGGTAATTCTCTGCAACTTGCTAGGATCAACACTAATAGTCACCACCAAAAAGAAAACTTGAGCAGGTCCCCAGTCAAAGATTTTAGTCCCTTGAAACTCACTGGAAACTTGATAGTTAACAATAGCCCAAGAACCAGTGTATCCAAGAGCATGGAAAGTACTCCCAAGAGTAAAGAGTTAAACCCCATGTCAAGTTCTTATTATAACAATGCAAGCAGAGGAGGACTAATGGGGAATATAATGAGAAGGAACAATGATGAGTTTGCAGCTCAGTTTCGGAGTCCAAGGAATAATAATGGAGTAGACCCTGAGTTGTTGAAGGGAATGGGAAATGAAGCATACAAGCAGGGAAGGTTTGAAGAGGCTCTGACCTTGTATGACAGAGCAATTGCTATTGACTCCAACAAGGCTACATATCATTGCAATAAGAGTGCAGCTTTGATCGCATTGGGACGGCTTCTTGAAGCAATCATGGAGTGTGAGGAAGCTATCAAGTTAGACCCTTCTTATGGCAGGGCTCACAACCGTTTGGCAACAATATATTTCAGGCTTGGAGAAGCAGAAAAGGCACTAACTTGTAATCAGGCAGCTTCAGATGATGATTCGGTTCTTGCTTTTCAAGCTCAGGCTCTTGAAGACCACCTTAACAAATGCACTGAAGCTAGGAAAGTCAAAGATTGGAAAACTATAATAAAGGAAACACAGTCCGCAATATCGTTAGGAGCCGATTCAGCTCCAAAGATCTATGCTTTACAAACCGAAGCCTTGTTGAAGCTCCTAAGACATAAAGAGGCACATGCCACTTATGAGAAAGTGCCAAAATTTGACCGTGATTGGTGTAACAAATTATTTGGACCGGTTTGTAGAGCTTATGTTTTGATGATAGGCGTACAAGTTTACTTGGCAGCCGGCAGGTTTGAGGATGCTATGACTGCATCTCAGCAAGCAGCCAAATTAGATCCAAGCAACAGTGAGGTGAATGCAGTGTTAAGGAGGGCAAGAGCAGCAACATCAGCCAGAATGAGTGGTAACTTGCTCTTCAAGGCATCAAAATTCACTGAAGCATGTGCGGTGTACAACGAAGGACTCGAGCATGATCCCAACAACCCAGTGCTGCTATGCAACAGGGCAGCGTGCCGTTCTAAACTAGGCCAATTTGAGAAAGCAATTGAAGATTGTAATGCAGCCCTTTTGGTTCAGCCTAGCTATAGCAAGGCAAGGTTGAGGAGAGCTGATTGCAATGCCAAGTTAGAACACTGGGAAGCTGCGATTGAAGACTATGAAGTGCTCATAAGAGAGAAGCCAGGGGATGAAGAGGTGGCCAGGGCTCTGTTTGAGGCCCAGCTCCAACTCAAGCTCCTGCGCGGTGAAGATATCAAAGACTTGAAATTTGGTTCGAATTTGGTTTTCATCTCGAGCAATGATCGGTTCCAACATTATGTAACCTCTCCTGGTATGTCTGTGGTGCTATTTTGCAACAAGGCAACCAATAAAAATGTACTGTTGGTGTTAGAGCAAACCTGCAAGAGATTTCCATCAGTTAATTTTCTTAAGGTGGAGATTGAAGATCACCCATACTTGGCAAAATCAGAAGATGTGAACTCTGTACCAGCCTTCAAAATATACAAGAATGGATCAAGGGTCAAAGAAATTCCGGGCAACAACCACCAGTTGTTGGAAAAATCAGTTAAACTATATAGCAGCTGA 2097 0.4311 MAGKGKNNNNKVDVDFGCGLVGRILQLKSNNRLRKSSVHSLPLKASNNKGQQRDHKVENESNKPQIHESKTPSPRNSFTETFHTLNDDHKQARKSTSAYRNSQNRRPSDAARSSTSSSSGNSEKQHREAIGNSLQLARINTNSHHQKENLSRSPVKDFSPLKLTGNLIVNNSPRTSVSKSMESTPKSKELNPMSSSYYNNASRGGLMGNIMRRNNDEFAAQFRSPRNNNGVDPELLKGMGNEAYKQGRFEEALTLYDRAIAIDSNKATYHCNKSAALIALGRLLEAIMECEEAIKLDPSYGRAHNRLATIYFRLGEAEKALTCNQAASDDDSVLAFQAQALEDHLNKCTEARKVKDWKTIIKETQSAISLGADSAPKIYALQTEALLKLLRHKEAHATYEKVPKFDRDWCNKLFGPVCRAYVLMIGVQVYLAAGRFEDAMTASQQAAKLDPSNSEVNAVLRRARAATSARMSGNLLFKASKFTEACAVYNEGLEHDPNNPVLLCNRAACRSKLGQFEKAIEDCNAALLVQPSYSKARLRRADCNAKLEHWEAAIEDYEVLIREKPGDEEVARALFEAQLQLKLLRGEDIKDLKFGSNLVFISSNDRFQHYVTSPGMSVVLFCNKATNKNVLLVLEQTCKRFPSVNFLKVEIEDHPYLAKSEDVNSVPAFKIYKNGSRVKEIPGNNHQLLEKSVKLYSS* 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1025 698 Pfam Thioredoxin 628 689 IPR013766 -
Amo08g1025 698 MobiDBLite consensus disorder prediction 96 129 - -
Amo08g1025 698 MobiDBLite consensus disorder prediction 66 81 - -
Amo08g1025 698 SUPERFAMILY TPR-like 470 582 IPR011990 GO:0005515
Amo08g1025 698 MobiDBLite consensus disorder prediction 33 48 - -
Amo08g1025 698 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 8 697 IPR044534 -
Amo08g1025 698 MobiDBLite consensus disorder prediction 33 129 - -
Amo08g1025 698 MobiDBLite consensus disorder prediction 165 197 - -
Amo08g1025 698 Gene3D Tetratricopeptide repeat domain 232 585 IPR011990 GO:0005515
Amo08g1025 698 Pfam TPR repeat 240 272 - -
Amo08g1025 698 SUPERFAMILY TPR-like 233 455 IPR011990 GO:0005515
Amo08g1025 698 ProSiteProfiles TPR repeat profile. 466 499 IPR019734 GO:0005515
Amo08g1025 698 PANTHER 43KDA POSTSYNAPTIC PROTEIN-RELATED 8 697 - -
Amo08g1025 698 SUPERFAMILY Thioredoxin-like 585 691 IPR036249 -
Amo08g1025 698 SMART tpr_5 418 453 IPR019734 GO:0005515
Amo08g1025 698 SMART tpr_5 267 300 IPR019734 GO:0005515
Amo08g1025 698 SMART tpr_5 466 499 IPR019734 GO:0005515
Amo08g1025 698 SMART tpr_5 534 567 IPR019734 GO:0005515
Amo08g1025 698 SMART tpr_5 301 334 IPR019734 GO:0005515
Amo08g1025 698 SMART tpr_5 233 266 IPR019734 GO:0005515
Amo08g1025 698 SMART tpr_5 500 533 IPR019734 GO:0005515
Amo08g1025 698 Gene3D Glutaredoxin 593 697 - -
Amo08g1025 698 MobiDBLite consensus disorder prediction 49 65 - -
Amo08g1025 698 ProSiteProfiles TPR repeat profile. 233 266 IPR019734 GO:0005515
Amo08g1025 698 Pfam Tetratricopeptide repeat 303 330 IPR019734 GO:0005515
Amo08g1025 698 ProSiteProfiles TPR repeat profile. 420 453 IPR019734 GO:0005515
Amo08g1025 698 CDD TRX_family 607 691 - -
Amo08g1025 698 Pfam Tetratricopeptide repeat 428 500 - -
Amo08g1025 698 Pfam Tetratricopeptide repeat 502 533 IPR001440 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1025 Amo-Chr8 17541908 17545421 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1025 K09527 - gmx:100814381 974.926
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g1025 08 17541908 17545421 Amo17g1476 17 51552493 51557615 hybridization
Amo17g3158 17 136027032 136028386 Amo08g1025 08 17541908 17545421 PCT
Amo07g1685 07 47827849 47832761 Amo08g1025 08 17541908 17545421 PCT
Amo08g1025 08 17541908 17545421 Amo17g3158 17 136027032 136028386 PCT
Amo08g1025 08 17541908 17545421 Amo07g1685 07 47827849 47832761 PCT