Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1023 ATGAAGAATCATGAGAGTAATGTGGTAGGTCCTGATGTGATGTTAATTGCATTAGCAGCATCCATTCCAAATGCAGCAGTTCTTGGGGGCTTTCTCAATCTCTCTTCTTCACAGATCAAAGACACTAACAACTGGATTGATTCAATCAGAGCTTCTTCTCCAACTCGCACTAGATCATCTTCTTCTTCTTCCGATAACCAAGACAAAATTAATTCTTGGATGCTGTATCATCCTTCAGCGCTGAACATGTTTGATCAGATAGCATATAACATGAAAGGGAAGAAGATTGTAACCTTTCTTGACTACGATGGAACTCTGTCCCCTATTGTTGCCGATCCTGATAAAGCTTTCATGACAAAAAAGATGAGAGCCACGCTGAAGGACATAGCAAGGCATTTTCCCACCGCAATCGTCACCGGAAGGTGCAGAGACAAGGTGTATAGCTTTGTGAAATTGGCACAACTTTACTACGCAGGAAGCCATGGAATGGACATAAAGGGTCCAACAAAAAGCCGAACTCCAAATAAAGGAAATGATAAAGCACTGCTTTGCCAACCTGCTAGTAAATTCCTGCCTATGATAGAAGAGGTGTACAAGATCTTATTAGAAAAAACAAAGAGTGTCCCAGGGGCTAAGGTAGAGAACAACAAGTTTTGTTTGTCCGTTCACTTTCGTTGTGTTGACGAAAAGTGTTGGGCTGCATTGGCGGAACAAGTTAGATTGGTGCTCAATGAGTACCCAAAATTGAAGCTAACCCAAGGAAGAAAAGTGCTTGAGATCCGTCCAACCATTAAATGGGACAAGGGAAAAGCTCTTGAATTCTTGTTAGAATCACTTGGATATGACAATTCCAATGACGTTTTCCCAATTTATATTGGCGATGATCGTACAGACGAGGATGCTTTTAAGGTTTTGCGCAACAGAGGTCAAGGGATTGGGATTCTTGTTTCTAGAGTTCCAAAAGACACAGAAGCTTCATACACCTTGAAAGATCCAGCAGAGGTTGAGCAATTTTTGCGGCGTCTAGTGCAATGGAAAAGATCTAGTACACAGTGA 1056 0.4167 MKNHESNVVGPDVMLIALAASIPNAAVLGGFLNLSSSQIKDTNNWIDSIRASSPTRTRSSSSSSDNQDKINSWMLYHPSALNMFDQIAYNMKGKKIVTFLDYDGTLSPIVADPDKAFMTKKMRATLKDIARHFPTAIVTGRCRDKVYSFVKLAQLYYAGSHGMDIKGPTKSRTPNKGNDKALLCQPASKFLPMIEEVYKILLEKTKSVPGAKVENNKFCLSVHFRCVDEKCWAALAEQVRLVLNEYPKLKLTQGRKVLEIRPTIKWDKGKALEFLLESLGYDNSNDVFPIYIGDDRTDEDAFKVLRNRGQGIGILVSRVPKDTEASYTLKDPAEVEQFLRRLVQWKRSSTQ* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1023 351 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 37 351 - -
Amo08g1023 351 SUPERFAMILY HAD-like 99 345 IPR036412 -
Amo08g1023 351 Pfam Trehalose-phosphatase 99 332 IPR003337 GO:0003824|GO:0005992
Amo08g1023 351 CDD HAD_TPP 99 335 - -
Amo08g1023 351 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 99 307 IPR006379 -
Amo08g1023 351 TIGRFAM T6PP: trehalose-phosphatase 93 343 IPR003337 GO:0003824|GO:0005992
Amo08g1023 351 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 37 351 IPR044651 GO:0004805|GO:0005992
Amo08g1023 351 Gene3D - 214 351 IPR023214 -
Amo08g1023 351 Gene3D - 96 194 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1023 Amo-Chr8 17489291 17491683 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1023 92 342 Trehalose Biosynthesis Gene Families AT1G70290 26.667 7.54e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1023 K01087 - gmx:100788641 506.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g1023 08 17489291 17491683 Amo20g1167 20 22881308 22886192 hybridization
Amo07g1680 07 47133965 47137886 Amo08g1023 08 17489291 17491683 PCT
Amo08g1023 08 17489291 17491683 Amo07g1680 07 47133965 47137886 PCT