Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1022 ATGGCAGCAATGATGGATTTCTACAGCAACACACAGCTTCAGTACTCAGATCCCTTTAGAGGTAGTGAGTTAATGGAAGTTCTTGAACCTTTTATTAAGAGTTCTTCCACAACACCCTCACCTTCACCTTCAACTTCTCCTTCTCCTCCTTCTTCAACTTCATCTCCTTCTACCTCTTACCCTTCTTCTTTCTACTTCCAATCTTCTTCTCCTTCTCCTTGTCTCCCTCCCCAACAACCCTGTTTCTTGTCCAACGGTTTACCCATGACCCAAAACTTGTTGGGATTCGGGACACAACCAACTTCAACTACTTCAACAACTTCTCTTCTTGGACTGAACCACCTAACCCCGTCACAGATCAATCAGATCCAGGCCCAAATACAGATCCAGGCCCAACCATGGCAAACACAGCACCTCAACTCCTGTGTTAGCTTCCTTGGGCCGAAGCCCATCCCGATGAAGCACGTGGGGTCAACAGCTTCAAAGCCCACGAAGCTTTACAGAGGGGTGAGGCAGAGGCACTGGGGAAAGTGGGTGGCTGAGATCAGACTCCCCAAGAACCGTACAAGGCTCTGGCTCGGAACCTTCGACACCGCAGAAGAGGCTGCTTTGGCTTACGACAAAGCCGCTTACAAGCTCCGCGGCGACTTTGCCAGACTCAACTTCCCTAACCTCCGTCACAACGGCTCCTCCGTCGGCGGTGACTTCGGCGAGTACAAGCCGCTTCACTCCTCTGTCGACGCAAAGCTTCAGGCCATATGCGAAGGCCTCGCGGAGATGCAGAAGCAGGGAAAGACGGAGAAGACGAAGCGGTCCAAAGCAGGCGCTGCTGGTTCCAAAGCTGCGGTTTCTAAGCCGGCGGCGGAGGACGTGAAGGCTTGTTGCAAGGTGGAAGAAGAAGCCGCAGCGTCGCCGCCCGAGAGCGATGGTGGTTCGTCGGAGGATTCTTCGCCGCTGTCAGATCTGACGTTTGGTGATGTTGATGACGTTGGGGATAATTTTAATCTTCAGAAGTTCCCTTCGTATGAGATTGATTGGGATTCTCTGTGA 1050 0.5219 MAAMMDFYSNTQLQYSDPFRGSELMEVLEPFIKSSSTTPSPSPSTSPSPPSSTSSPSTSYPSSFYFQSSSPSPCLPPQQPCFLSNGLPMTQNLLGFGTQPTSTTSTTSLLGLNHLTPSQINQIQAQIQIQAQPWQTQHLNSCVSFLGPKPIPMKHVGSTASKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLRHNGSSVGGDFGEYKPLHSSVDAKLQAICEGLAEMQKQGKTEKTKRSKAGAAGSKAAVSKPAAEDVKACCKVEEEAAASPPESDGGSSEDSSPLSDLTFGDVDDVGDNFNLQKFPSYEIDWDSL* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1022 349 Pfam AP2 domain 167 215 IPR001471 GO:0003700|GO:0006355
Amo08g1022 349 SMART rav1_2 166 229 IPR001471 GO:0003700|GO:0006355
Amo08g1022 349 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 4 348 - -
Amo08g1022 349 CDD AP2 165 225 IPR001471 GO:0003700|GO:0006355
Amo08g1022 349 MobiDBLite consensus disorder prediction 30 64 - -
Amo08g1022 349 MobiDBLite consensus disorder prediction 262 326 - -
Amo08g1022 349 Gene3D AP2/ERF domain 166 224 IPR036955 GO:0003700|GO:0006355
Amo08g1022 349 SUPERFAMILY DNA-binding domain 166 224 IPR016177 GO:0003677
Amo08g1022 349 ProSiteProfiles AP2/ERF domain profile. 166 223 IPR001471 GO:0003700|GO:0006355
Amo08g1022 349 PRINTS Ethylene responsive element binding protein signature 167 178 IPR001471 GO:0003700|GO:0006355
Amo08g1022 349 PRINTS Ethylene responsive element binding protein signature 189 205 IPR001471 GO:0003700|GO:0006355
Amo08g1022 349 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 4 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1022 Amo-Chr8 17454785 17456880 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1022 1 349 AP2-EREBP Transcription Factor Family AT1G78080 51.622 1.99e-97 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo08g1022 AP2 7.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1022 K09286 - gmx:100800478 338.961
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g1022 08 17454785 17456880 Amo17g1494 17 53324048 53326255 hybridization
Amo17g1494 17 53324048 53326255 Amo08g1022 08 17454785 17456880 PCT
Amo08g1022 08 17454785 17456880 Amo17g1494 17 53324048 53326255 PCT