Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1005 ATGAACGCCACACAGAAAATGTCCAAGATACCCCTCCGCATTCGCAGGTTCTCTCTACATTTCTTCTTCCTGCTTACCCTCACACTGTCCTCCGATGTCATTTCACAAACCACCGAACAAACCACCCTTCTCACCTTCAAACGCCAACTAGGCGATCCGCCATCACTACAATCATGGCAACCGTCGCCGTCGTCGTCTCCGTGCGGGTGGCAGGAAGTCCGGTGCACCGGTGGCGCAGTCACGGAGCTTCTCCTCGCCAATAAGGATATCACCGTGAAGAACCTCCTGGCGCCGACGATCTGCGACGGCCTCAGGAACCTCACGAAGCTCGACCTCTCCAACAACTCTATCTCCGGTGAGTTTCCGACCTCACTCTACAATTGCTCCAATCTCAACTACCTCGACCTCTCACAGAACTACCTGGCCGGAAAAATTCCCGATGACGTCGACCGCCTCAGAACCCTAACGTACCTCAACCTTGGCGGCAACAGCTTCATCGGCGACGTTCCTCCGGCCATCGGAAACCTGCCGGAACTCAGAACCCTCCACCTCTTCCAGAACAACTTCAACGGAACGTTAGCAAAAGAAATCGGAAACCTCTCCAATCTGGAAATCCTTGGTCTTGCCTTTAATTACCGTCTTGCCCCTGCGCCGATCCCGGTCGACTTTGGGAACCTGACGAACCTGAAGTTCWTGTGGCTGWSWCAGTGCAACTTGACRGGAGAGATTCCCCAGAYTTTCGCGAAACTSGAGAATCTTGAAAAGTTGGATTTYTCAATGAACAACTTAACAGGGAGAATTCCTACTAGCTTGTTTTCTTTAAGAAATTTGACGTTTTTGTATCTGTACCACAATAAGTTGTTTGGTGAGATACCAAATTCGGTGCAAGCTTTGAACCTGGCTGGYGTTGATTTGAGCATGAACAATTTGACAGGTTCTATACCAAAAGATTTTGGAAAGTTGAACAACTTGACGGCTTTGCTGCTGTATTATAACCAGTTGAGTGGTGAGYTTCCAAATGGTTTAGGATTATTACCAAAGCTTAGTAATTTTAGTGTTTTTGGGAACAAACTGAATGGAACTCTGCCTCCGGAATTCGGCAGGCATTCGAGGCTGGTGGGGTTTGAGGTTGACAGCAATCAGTTGAGTGGAGGGCTGCCGGAGCATTTGTGRGACGGCGGTGCTCTGAGGGGTGTGGTGGCTTTCTCCAATGATCTGAGTGGTGACTTGCCTCAATGGCTTGGGAATTGTAGTTCTCTTGTCACAGTTCAGCTTCACAATAACAGGTTRTCAGGGGAGGTTCCTTTGAGTTTGTGGACTTCGAGGAGCCTTGAGAGCTTGATGCTGAGCAACAACTCGTTTTCCGGTCAGATTCCAAGAGAATTGTCCCGGAGTATGACAAGGTTGGAGATCAGAGACAACAAGTTTTCTGGTCCAATATTGCTTGGTGTTTCTTCTGTTGTGAATCTTGTGGTTTTTAAGGCAGGAAACAACATGCTTTCCGGTGAGATTCCAAGAGAATTGACCGGTATTTCTCAGATGACAACTCTCATGCTTGATGGGAATCAACTTTCCGGTACGCTTCCATCCGACATAATTTCATGGAAGTCGTTGAACACTTTAACCCTATCAAGAAACAACCTTTCAGGTCAAATCCCACTAGCTATGAGTACTCTTCCTAGTCTGGTTTACTTGGATTTGTCTGAAAATGAGTTGTCTGGTGAAATACCAACTCAGTTAGGCGACTTGAGGTTTGTTTTTCTCAACTTGTCCTATAATAAGCTTTCTGGGAACATACCAGATGAGCTTAACAACCTCGCCTATGAAAGTAGTTTCTTGAACAATCCCAATCTGTGTGCTTATGATCCAAAAGTCAATCTATCTAATTGCTTAACTAAAACCTCATCCCACTCCAGCAATTCATCTAAAAAGTTCTTTGCCTTGATTCTTGGGGTCATCATCATTGTATTGTTAGCCGCTGCCCTCTTGGCATTGTGCAAGCTGACAAAGCAACGGGGTAAAAAGCTGAGTTGTGGCTGTAAGCTTTCAACATGGAGGCTCACTTCATTCCAGAGGCATGACCTCACAGAAATTAATCTCTTCTCACACTTGACAGACAGCAACCTTATTGGAAGTGGAGGCTTTGGAAAAGTTTACCGGATCGCTTCAAATCGCCCAGGTGAGTATGTTGCTGTGAAGCAGATTTGGAGTGACAAGGATGTGGATCACAAGCGGGAGAAAGAGTTTATGGCTGAGGTTGAAATCTTGGGCAACATTAGGCATTCTAATGTAGTGAAACTCTTGTGTTGCTACTCAAGTGAGAACTCAAAGCTTCTTGTATATGAGTACATGGAAAATCATAGCCTTGACAAATGGCTTCATGGAAAGAATAAAAAGTCACCAATTGGTTTGAGTACACCCAACAGGACTCATGCGGTGTTGAGTTGGCCAACGAGGTTGAAGATTGCCATTGGAGCTGCACAAGGCCTATGTTACATGCACCACGAGTGCTCACCATCAATCATCCATCGCGATGTTAAGTCTAGCAATATACTATTAAACTCCGAATTCAAGGCTAGTATAGCAGATTTTGGACTCGCCACGATGCTGTTAAAGCCAGGGGAGCTGCACACCATGTCTGCTTTAGCAGGGTCTTTTGGCTACATTCCACCAGAATATGCTTATTGTAGCAAGATCAATGAGAAAGTCGATGTATATAGTTTTGGGGTTGTGCTCCTAGAGCTTGTGACTGGAAGAGAGCCTAAATGTGGAGAAGATGGAAGCAGCCTAGTTGACTGGGCATGGAGGCAATACAGTGAGGGGAAGTGTCTTGCTGATGRCTTAGATGAGGATATCAAAGAAACATGCCACGTGGAAGATATGACTACTGRCTACAAACTAGGGCTCATTTGCACAAGCTCATTACCCTCATCTAGGCCTTCRACAAGGGAGATTTTGCAAGTTCTTCGTCAGTGTTGTCACCCAGGTTCTTCACGTAAGAGAGTGGCAACTGACTTTGACATAACTCCCCTACTTAGTGATGCTAGGTACATAGCCAGTTACAAGGACAGTAATGCTACAAGCGAGAACGAAGAAAGCCGCTTGTATAGTAGTGTGTAA 3120 0.4571 MNATQKMSKIPLRIRRFSLHFFFLLTLTLSSDVISQTTEQTTLLTFKRQLGDPPSLQSWQPSPSSSPCGWQEVRCTGGAVTELLLANKDITVKNLLAPTICDGLRNLTKLDLSNNSISGEFPTSLYNCSNLNYLDLSQNYLAGKIPDDVDRLRTLTYLNLGGNSFIGDVPPAIGNLPELRTLHLFQNNFNGTLAKEIGNLSNLEILGLAFNYRLAPAPIPVDFGNLTNLKFXWLXQCNLTGEIPQXFAKLENLEKLDFSMNNLTGRIPTSLFSLRNLTFLYLYHNKLFGEIPNSVQALNLAGVDLSMNNLTGSIPKDFGKLNNLTALLLYYNQLSGEXPNGLGLLPKLSNFSVFGNKLNGTLPPEFGRHSRLVGFEVDSNQLSGGLPEHLXDGGALRGVVAFSNDLSGDLPQWLGNCSSLVTVQLHNNRLSGEVPLSLWTSRSLESLMLSNNSFSGQIPRELSRSMTRLEIRDNKFSGPILLGVSSVVNLVVFKAGNNMLSGEIPRELTGISQMTTLMLDGNQLSGTLPSDIISWKSLNTLTLSRNNLSGQIPLAMSTLPSLVYLDLSENELSGEIPTQLGDLRFVFLNLSYNKLSGNIPDELNNLAYESSFLNNPNLCAYDPKVNLSNCLTKTSSHSSNSSKKFFALILGVIIIVLLAAALLALCKLTKQRGKKLSCGCKLSTWRLTSFQRHDLTEINLFSHLTDSNLIGSGGFGKVYRIASNRPGEYVAVKQIWSDKDVDHKREKEFMAEVEILGNIRHSNVVKLLCCYSSENSKLLVYEYMENHSLDKWLHGKNKKSPIGLSTPNRTHAVLSWPTRLKIAIGAAQGLCYMHHECSPSIIHRDVKSSNILLNSEFKASIADFGLATMLLKPGELHTMSALAGSFGYIPPEYAYCSKINEKVDVYSFGVVLLELVTGREPKCGEDGSSLVDWAWRQYSEGKCLADXLDEDIKETCHVEDMTTXYKLGLICTSSLPSSRPSTREILQVLRQCCHPGSSRKRVATDFDITPLLSDARYIASYKDSNATSENEESRLYSSV* 1040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1005 1039 SUPERFAMILY L domain-like 50 384 - -
Amo08g1005 1039 Gene3D Transferase(Phosphotransferase) domain 1 784 1007 - -
Amo08g1005 1039 Gene3D Ribonuclease Inhibitor 299 393 IPR032675 -
Amo08g1005 1039 SMART LRR_typ_2 176 200 IPR003591 -
Amo08g1005 1039 SMART LRR_typ_2 511 535 IPR003591 -
Amo08g1005 1039 SMART LRR_typ_2 442 465 IPR003591 -
Amo08g1005 1039 SMART LRR_typ_2 250 274 IPR003591 -
Amo08g1005 1039 SMART LRR_typ_2 321 344 IPR003591 -
Amo08g1005 1039 SMART LRR_typ_2 559 583 IPR003591 -
Amo08g1005 1039 SMART LRR_typ_2 104 128 IPR003591 -
Amo08g1005 1039 SMART LRR_typ_2 345 369 IPR003591 -
Amo08g1005 1039 SUPERFAMILY Protein kinase-like (PK-like) 698 989 IPR011009 -
Amo08g1005 1039 ProSitePatterns Protein kinases ATP-binding region signature. 710 733 IPR017441 GO:0005524
Amo08g1005 1039 SUPERFAMILY RNI-like 299 607 - -
Amo08g1005 1039 SMART serkin_6 704 1012 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo08g1005 1039 Gene3D Phosphorylase Kinase; domain 1 685 783 - -
Amo08g1005 1039 Pfam Leucine rich repeat 513 572 IPR001611 GO:0005515
Amo08g1005 1039 Pfam Leucine rich repeat 105 164 IPR001611 GO:0005515
Amo08g1005 1039 Pfam Leucine rich repeat 238 287 IPR001611 GO:0005515
Amo08g1005 1039 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 23 1005 - -
Amo08g1005 1039 Pfam Protein kinase domain 706 987 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo08g1005 1039 PRINTS Leucine-rich repeat signature 559 572 - -
Amo08g1005 1039 PRINTS Leucine-rich repeat signature 107 120 - -
Amo08g1005 1039 ProSiteProfiles Protein kinase domain profile. 704 997 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo08g1005 1039 Gene3D Ribonuclease Inhibitor 34 215 IPR032675 -
Amo08g1005 1039 ProSitePatterns Serine/Threonine protein kinases active-site signature. 841 853 IPR008271 GO:0004672|GO:0006468
Amo08g1005 1039 Pfam Leucine rich repeat N-terminal domain 40 75 IPR013210 -
Amo08g1005 1039 PANTHER KINASE FAMILY WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 23 1005 - -
Amo08g1005 1039 Gene3D Ribonuclease Inhibitor 216 298 IPR032675 -
Amo08g1005 1039 Gene3D Ribonuclease Inhibitor 396 639 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1005 Amo-Chr8 17091019 17094304 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1005 33 1012 Receptor kinase-like Gene Family AT5G25930 53.611 0.0 1003
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Amo08g1005 Pkinase 2.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1005 - K00924 adu:107461025 1923.67