Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1001 ATGGCGATTGCAACAGAGCAACCTCAACAACAACATCAACAACAGGCTTCTTCGGAGGTTTCAGCTGGGGAGCAAAAGAGGTGGACACTTAACGATTTCGACATTGGGAAACCGCTTGGAAGGGGGAAATTCGGCCATGTCTATTTGGCCAGGGAAAAGAGAAGTAATCATATTGTTGCTCTGAAAGTACTCTTTAAGAGCCAGTTGCAACAGTCCCAAGTTGAGCATCAGCTTCGGCGAGAAGTGGAGATTCAGAGTCATCTCAGACATCCTCACATCTTACGCCTTTACGGCTACTTTTATGATCAGAAACGAGTTTACTTGATTTTGGAGTATGCACCTAAAGGTGAACTATACAAAGAATTGCAGAAATGCAAATATTTCAGTGAAAGACGTGCAGCTACCTATGTTGCATCATTGGCCCGAGCCCTGATATATTGCCATGGAAAGCATGTAATACATAGGGATATTAAACCAGAGAACCTCCTTATGGGAGCTCAGGGTGAACTGAAGATAGCAGATTTTGGGTGGTCAGTGCACACCTTCAACCGAAGGCGAACCATGTGTGGCACACTGGATTACCTTCCACCTGAGATGGTGGAGAGTATAGAACATGATGCTAGCGTGGATATATGGAGTCTTGGTGTCCTGTGCTATGAGTTTCTATATGGAGTCCCCCCTTTTGAGGCTAAAGAACATTCTGATACTTATAGGAGGATTGTACAAGTGGATCTCAAGTTCCCCCCAAAACCCATTGTGTCTTCTGCTGCAAAGGACCTCATCAGTCAGATGCTGGTCAAGGACTCTTCTCAACGTCTACCTTTACACAAACTTCTTGAACACCCTTGGATTGTTCAGAATGCGGAGCCCTCTGGTGTATATAGGGGCTAA 891 0.4512 MAIATEQPQQQHQQQASSEVSAGEQKRWTLNDFDIGKPLGRGKFGHVYLAREKRSNHIVALKVLFKSQLQQSQVEHQLRREVEIQSHLRHPHILRLYGYFYDQKRVYLILEYAPKGELYKELQKCKYFSERRAATYVASLARALIYCHGKHVIHRDIKPENLLMGAQGELKIADFGWSVHTFNRRRTMCGTLDYLPPEMVESIEHDASVDIWSLGVLCYEFLYGVPPFEAKEHSDTYRRIVQVDLKFPPKPIVSSAAKDLISQMLVKDSSQRLPLHKLLEHPWIVQNAEPSGVYRG* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1001 296 PANTHER SERINE/THREONINE-PROTEIN KINASE IAL-RELATED 1 296 IPR030616 GO:0004672
Amo08g1001 296 Pfam Protein kinase domain 35 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo08g1001 296 CDD STKc_Aurora 32 285 - -
Amo08g1001 296 SUPERFAMILY Protein kinase-like (PK-like) 20 288 IPR011009 -
Amo08g1001 296 Gene3D Transferase(Phosphotransferase) domain 1 117 292 - -
Amo08g1001 296 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672|GO:0006468
Amo08g1001 296 SMART serkin_6 33 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo08g1001 296 PIRSF ILK 4 281 - -
Amo08g1001 296 ProSiteProfiles Protein kinase domain profile. 33 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo08g1001 296 ProSitePatterns Protein kinases ATP-binding region signature. 39 62 IPR017441 GO:0005524
Amo08g1001 296 MobiDBLite consensus disorder prediction 1 24 - -
Amo08g1001 296 Gene3D Phosphorylase Kinase; domain 1 21 116 - -
Amo08g1001 296 PANTHER SERINE/THREONINE-PROTEIN KINASE AURORA-1 1 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1001 Amo-Chr8 17017226 17019728 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g1001 24 295 CBL-interacting serine-threonine protein kinases AT5G10930 34.767 3.27e-54 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Aur Amo08g1001 Pkinase 7.9e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1001 K08850 - qsu:112003432 566.229