Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0980 TTGTTCCTTCTTTCTTATATTATATGTAACTCCCTTATCACTTTCTTACGCTTCAAGACTCCTAATCACAACCTTCTTCATTCCTTCCCTTCCATTCCCTCATACACTTACGTCAACATGCTTGCCGCCCCTTCTTCCCACCACACTCTTCTCCTTCTCTTCATTTCCTCGTTAATCCTCGCCGTTAATTCTGACGATCGTCAACTCCTCCTCGACTTTAAGTCAAACCTTCAATCACCAAACCCCAACGCCTTCCTCTCATGGACCCCTGACAACTCCGTTTGCGCCTTCAACGGCGTTACGTGCGACGCTTCCAATTCCGTTACCGGAATCAACCTCTCCAACCATTCCCTCACCGGCGTTCTTGATTTTCACAATCTCTGCCGCATCCAGTCTCTCCAGACTCTCGAGCTCGGTTTCAACTCTCTCCATGGAAAAATCTCCGACGACATCAGAAACTGCACCGGGCTCAAGTTCTTGGACCTTGGGAACAACAACTTCTACGGAACGTTCCCTGACATCTCACCGTTAAACAAACTGCAGTACCTGTTCTTGAACCAGAGCGGTTTCTCCGGAACTTTTCCATGGCAGTCACTGTTGAACATGACGGATTCTCTGTTACAGTTAAGCGTTGGTGATAACCCCTTCGATCTCACGCCATTTCCGAAAGAAGTTGTTAGTCTCAAGAAACTGAACTGGCTCTACCTTTCGAATTGTTCACTTGGAGGGAAAATTCCAGTCGGAATCGGCAACCTTACGGAGCTTACGGAACTGGAATTCTCTGATAACTTAGTCACCGGAGAGCTTCCCGGCGAGATCGTTAATCTGAAGAAGCTATGGCAGCTGACGTTCTACAATAATTCCCTAAGCGGAAAGCTTCCCTTCGGTCTTCGCAACCTTACGGGACTAAACTACTTTGACGGTTCAATGAACAAACTGGAAGGCGATCTCACCGAGGTGAAGTTCTTAACCAATCTCGTTTCGTTTCAGCTCTTCGAAAACGGTTTAAGCGGTGAGATTCCGAAAGAGATCGGCGAATTCAAGAGCCTCAAGGCATTATCTCTGTATAGAAACAAATTAATTGGTGAAATCCCTCAGAGACTGGGTTCTTGGACGGAATTCGATTTCGTGGATGTTTCGGAGAACATGCTTTCGGGTCCGATTCCACCTGACATGTGCAAGAAGGGGAAAATGACTGCTCTGTTAGTGCTTCAGAACAAGCTCACCGGATCAATACCGGAAACCTACGCTTCCTGTAACACTCTTAACCGCTTCAGAGTCAGTAACAACTCGCTCTCCGGTTCCGTACCGGGAGGACTTTGGGGTCTTCCGAACGTAGTAATCATAGATATTGAACTCAACAATCTAGAAGGTTCGGTTACCTCTGACATCAAGAGCGCTAAGAATCTGTCTCAGATATACGCCCGGAAGAACCGGTTATCCGGTCAGATACCAAAAGAGATTTCGGAAGCGAGTTCGTTAGTCACTATTGATCTCAGCGAGAATCAAGTTTCTGGTGAGATTCCAGATTCAATTGGAGAATTGAAACAACTCGGAAGCCTTTATTTACAGAAGAACGAGTTAACTGGATCGATACCTAAGTCTGTAGGTTCTTGTATTGCGCTAAACAACGTAGATTTATCGATGAACTCGCTCTCCGGCAAGATTCCTTCTTCGTTAGGATCTTTACCGGCTCTGAACTCGCTTAACATGTCCAGGAATCAACTGTCCGGCGAGATTCCGGCAAGTTTGGCGTCGCTGAGATTGAGCCTCTTTGACTTGTCGGAGAATAGGTTGACCGGCGAAATTCCTCAGGCTCTTACTATTCAAGCTTACAATGGTAGCCTCGCTGGAAACCCTGGACTCTGCAGCGTCAACTTGATCGGTTCATTCCCTCGGTGCTCTAAGAATTCTGGCATGTCAAAAGGCGTACGTACTCTTGTGGTCTGCATTTCAGTTGGGCTGGTTGTGGTTATGCTCTGTTTGACGCTTTACTTGAAAAAGAACAAGAAGAAAGTGAAATATGGAGGAGGAGAGCGTTCTCTTAAAGAAGAGTACTCATGGGACGTAAAATCCTTCCATGTTCTAAGCTTCACCGAAAACGAGATTCTTGATTCGATCAAGCAAGAGAATCTCATTGGAAAAGGAGGTTCAGGTAATGTTTACAGGGTGATATTGTCCAATGGAAAAGAGCTCGCTGTAAAGCATATATGGAATACCGATGTTGATTGGAGGACGAAGAAGTCGAGATCCTGGAGTACTGGTAGTGGCAGTGGAACGCCCATGCTGGCCGGAAAGCGCACTAGGAAGTCCAAGGAGTTTGATGCAGAGGTGCAGGCATTGAGCTCCATAAGGCATGTGAATGTGGTGAAATTGTATTGTAGCATAACAAGTGAGGATTCTAGTCTTTTGGTGTATGAGTATTTGCCTAATGGAAGCTTGTGGGATAAGTTGCACACCGGTGGGAAGATGGAGCTTGATTGGGAGATAAGATATGAGATTGCAGTTGGCTCCGCCAAGGGCTTGGAGTACTTGCATCACTCATGCGAGAGGCCTGTTATTCATCGGGATGTTAAGTCCAGTAACATCTTGCTTGATGAGTTCTTGAAGCCTCGGATTGCAGATTTTGGTTTGGCTAAGATTGTTCAAGCTAACGTTGCAAAGGATTCTACTCAAGTCATTGCTGGAACACATGGTTATATTGCTCCTGAATATGGCTACACTTATAAGGTGAATGAGAAGAGTGACGTGTACAGTTTTGGAGTTGTGTTGATGGAGCTAGTGACAGGTAAAAGGCCAATTGAAGCAGAATTTGGTGAAAACAAAGACATAGTAAGCTGGGTCCATAGTAAAGCACAGAACAAAGAAATGTTTAAGAGTGTTGTGGATTCAAGAATTCCAGAGATGTATAAAGAAGAAGCTTGCAAAGTGTTAAGAACTGCAGTTATATGCACAGCAACTCTTCCAGCTATGAGGCCTACTATGAGAACAGTGGTTCAAATGCTTGAAGATGCGGAGCCATGTAAATTGGTTGGAATTGTTATAAACAAAGATGGCACTCAAAACAAAATCAGAGCTAATGCCAAATAG 3090 0.4511 LFLLSYIICNSLITFLRFKTPNHNLLHSFPSIPSYTYVNMLAAPSSHHTLLLLFISSLILAVNSDDRQLLLDFKSNLQSPNPNAFLSWTPDNSVCAFNGVTCDASNSVTGINLSNHSLTGVLDFHNLCRIQSLQTLELGFNSLHGKISDDIRNCTGLKFLDLGNNNFYGTFPDISPLNKLQYLFLNQSGFSGTFPWQSLLNMTDSLLQLSVGDNPFDLTPFPKEVVSLKKLNWLYLSNCSLGGKIPVGIGNLTELTELEFSDNLVTGELPGEIVNLKKLWQLTFYNNSLSGKLPFGLRNLTGLNYFDGSMNKLEGDLTEVKFLTNLVSFQLFENGLSGEIPKEIGEFKSLKALSLYRNKLIGEIPQRLGSWTEFDFVDVSENMLSGPIPPDMCKKGKMTALLVLQNKLTGSIPETYASCNTLNRFRVSNNSLSGSVPGGLWGLPNVVIIDIELNNLEGSVTSDIKSAKNLSQIYARKNRLSGQIPKEISEASSLVTIDLSENQVSGEIPDSIGELKQLGSLYLQKNELTGSIPKSVGSCIALNNVDLSMNSLSGKIPSSLGSLPALNSLNMSRNQLSGEIPASLASLRLSLFDLSENRLTGEIPQALTIQAYNGSLAGNPGLCSVNLIGSFPRCSKNSGMSKGVRTLVVCISVGLVVVMLCLTLYLKKNKKKVKYGGGERSLKEEYSWDVKSFHVLSFTENEILDSIKQENLIGKGGSGNVYRVILSNGKELAVKHIWNTDVDWRTKKSRSWSTGSGSGTPMLAGKRTRKSKEFDAEVQALSSIRHVNVVKLYCSITSEDSSLLVYEYLPNGSLWDKLHTGGKMELDWEIRYEIAVGSAKGLEYLHHSCERPVIHRDVKSSNILLDEFLKPRIADFGLAKIVQANVAKDSTQVIAGTHGYIAPEYGYTYKVNEKSDVYSFGVVLMELVTGKRPIEAEFGENKDIVSWVHSKAQNKEMFKSVVDSRIPEMYKEEACKVLRTAVICTATLPAMRPTMRTVVQMLEDAEPCKLVGIVINKDGTQNKIRANAK* 1030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0980 1029 ProSitePatterns Protein kinases ATP-binding region signature. 713 735 IPR017441 GO:0005524
Amo08g0980 1029 Gene3D Transferase(Phosphotransferase) domain 1 809 1013 - -
Amo08g0980 1029 SUPERFAMILY L domain-like 85 389 - -
Amo08g0980 1029 SUPERFAMILY L domain-like 317 632 - -
Amo08g0980 1029 ProSiteProfiles Protein kinase domain profile. 707 1009 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo08g0980 1029 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 49 1014 - -
Amo08g0980 1029 Gene3D Ribonuclease Inhibitor 222 321 IPR032675 -
Amo08g0980 1029 PANTHER RECEPTOR-LIKE PROTEIN KINASE 7 49 1014 - -
Amo08g0980 1029 ProSitePatterns Serine/Threonine protein kinases active-site signature. 853 865 IPR008271 GO:0004672|GO:0006468
Amo08g0980 1029 Gene3D Ribonuclease Inhibitor 322 394 IPR032675 -
Amo08g0980 1029 Pfam Protein kinase domain 709 1000 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo08g0980 1029 Pfam Leucine rich repeat N-terminal domain 64 103 IPR013210 -
Amo08g0980 1029 Gene3D Phosphorylase Kinase; domain 1 690 808 - -
Amo08g0980 1029 SUPERFAMILY Protein kinase-like (PK-like) 695 1003 IPR011009 -
Amo08g0980 1029 SMART serkin_6 707 1009 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo08g0980 1029 Gene3D Ribonuclease Inhibitor 396 636 IPR032675 -
Amo08g0980 1029 Gene3D Ribonuclease Inhibitor 62 221 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0980 Amo-Chr8 16653436 16656978 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0980 48 1018 Receptor kinase-like Gene Family AT1G09970 60.634 0.0 1130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Amo08g0980 Pkinase 3.3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0980 - - gmx:100779554 1431.77