Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0978 TGTGACTCAGCAGCCGGAGCGCTGAGCTGGCTGTTTGTGGTTTACGTAGGCAGCCTTAAACGACACCGTTTTACCTGGAGGGTACTTCCATTGCTTGTTAACAAGAGGACGGGATGCAAGAGGCCGCAAGGTGAGATTAGAGGAACTCCAGCGAACATGAGTGGTTGTTCTTCACTACAGCCAATCCCACAGTCATCGGTGTTCCCAAGCCATGTTCTTTCCTACCATGCTAGCCCAACTTCCTCATCATTCCCCAGCCCTCTCGCATTGATCCCAACCTTCAAAACCCCTCTTCATTACTCCTATCATTCATTCATAACATCACCTCCATCCCCACAAACCTTTGTCCTCTTAGAATATCCAATAGTGTCCCTGTTACCCTTCATCTTTCTTCCCCAACCTCCAGGGGTTCTAAAAGAAAGGCGGATTTCGAATCCCTCTCCAATGTCTCTTCTTTTAATTCGTTCCGCCATCCTCTCTTCGCGTTATCGGCTCCATCCAGCCCCTTCCGCCGCCACTAATTGGCTACTTTCACCATTCCTAAGTGTGATGAATCTGATGCTTCCACTGTGGACTCTGATCACTGGGTTAGTTTTCAGACAACAACTGCATCGGCTGCTCCTCCATCGCATACCTTTAATCTTTTCCATGGATATGAATGAAGGCATGCAATGGGGCCAGGCTGCAGAGAGAGGAAGACCATCGGATTTTGACTTTGAGAATAGTAGAGTGAAGCCATGGGAGGGTGAGAGGATACATGAGGTGGGAGTGGATGAGTTGGAACTTACTCTAGGCTGTGGAAAGGCCTGA 810 0.4889 CDSAAGALSWLFVVYVGSLKRHRFTWRVLPLLVNKRTGCKRPQGEIRGTPANMSGCSSLQPIPQSSVFPSHVLSYHASPTSSSFPSPLALIPTFKTPLHYSYHSFITSPPSPQTFVLLEYPIVSLLPFIFLPQPPGVLKERRISNPSPMSLLLIRSAILSSRYRLHPAPSAATNWLLSPFLSVMNLMLPLWTLITGLVFRQQLHRLLLHRIPLIFSMDMNEGMQWGQAAERGRPSDFDFENSRVKPWEGERIHEVGVDELELTLGCGKA* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0978 269 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 36 148 IPR033264 GO:0003700|GO:0006351|GO:0009742
Amo08g0978 269 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 216 268 IPR033264 GO:0003700|GO:0006351|GO:0009742
Amo08g0978 269 Pfam BES1/BZR1 plant transcription factor, N-terminal 36 89 IPR008540 -
Amo08g0978 269 PANTHER BES1/BZR1 HOMOLOG PROTEIN 1 216 268 - -
Amo08g0978 269 PANTHER BES1/BZR1 HOMOLOG PROTEIN 1 36 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0978 Amo-Chr8 16606695 16607784 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0978 230 269 BZR Transcription Factor Family AT1G75080 72.500 1.57e-13 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BES1 Amo08g0978 BES1_N 4.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0978 K14503 - pop:7478010 145.591