LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo08g0956	ATGCTTCCCGCCCCTTCTTCCCACCACACTCTTCTCCTTCTCTTCGTTTCCTCATTAATCCTCGCCGTTAATTCTGACGATCGTCAACTCCTCCTCGACTTTAAGTCAACCCTTCAATCACCAAACCCCAACGCCTTCCTCTCATGGACCCCTGACAACTCCGTTTGCGCCTTCAACGGCGTTACGTGTGACGCTTCCAATTCCGTTACCGGAATCAACCTCTCCAACCGTTCCCTCACCGGCGTTCTTGATTTTCACAATCTCTGCCGCATCCAGTCTCTCCAGACTCTCGAGCTCGGTTTCAACTCTCTCCATGGAAAAATCTCCGACGACATCAGAAACTGCACCGGGCTCAAGTTCTTGGACCTTGGGAACAACAACTTCTACGGAACGTTCCCTGACATCTCACCGTTAAACAAACTGCAGTACCTGTTCTTGAACCAGAGCGGTTTCTCCGGAACTTTTCCATGGCAGTCACTGTTGAACATGACGGATTCTCTGTTACAGTTAAGCGTTGGTGATAACCCCTTCGATCTCACGCCATTTCCGAAAGAAGTTGTTAGTCTCAAGAAACTGAACTGGCTCTACCTTTCGAATTGTTCACTTGGAGGGAAAATTCCAGTCGGAATCGGCAACCTTACGGAGCTTACGGAACTGGAATTCTCCGATAACTTCGTCACCGGAGAGCTTCCCGGCGAGATCGTTAATCTGAAGAAGCTGTGGCAGCTGACGTTCTACAATAATTCCCTAAGCGGAAAGCTTCCCTTCGGTTTTCGCAACCTTACGGGACTAAACTACTTTGACGGTTCAATGAACAAACTGGAAGGCGATCTCACCGAGGTGAAGTTCTTAACCAATCTCGTTTCGTTTCAGCTCTTCGAAAACGGTTTCGGCGGTGAGATTCCGAAAGAGATCGGCGAATTCAAGAGCCTCAAGGCATTATCTCTGTATAGAAACAAATTAATTGGTGAAATCCCTCAGAGACTGGGTTCTTGGACGGAATTCGATTTCGTGGATGTTTCGGAGAACATGCTTTCGGGTCCGATTCCACCTGACATGTGCAAGAAGGGGAAAATGACTGCTCTGTTAGTGCTTCAGAACAAGCTCACCGGATCAATACCGGAAACCTACGCTTCCTGTAACACTCTTAACCGCTTCAGAGTCAGTAACAACTCGCTCTCCGGTTCCGTACCGGGAGGAATTTGGGGTCTTCCGAACGTAGATATCATAGATATTGAACTCAACAATCTAGAAGGTTCGGTTACCTCTGACATCAAGAGCGCTAAGAAACTGGCTCAGATATACGCCCGGAAGAATCGGTTATCCGGTCAGATACCAAAAGAGATTTCGGAAGCGAGTTTGTTAGTCACTATTGATCTCAGCGAGAATCAAGTTTCTGGTGAGATTCCAGATTCAATTGGAGAATTGAAACAACTCGGAAGCCTTTATTTACAGAAGAACGAGTTAACTGGATCGATACCTAAGTCTATAGGTTCTTGTACTACGCTAAACGACGTAGATTTATCGATGAACTCGCTCTCCGGCAAGATTCCTTCTTCGTTAGGATCTTTACCGGCTCTGAACTCGCTTAACATGTCTAGGAATCAACTGTCCGGCGAGATTCCGGAAAGTTTGGCGTTGCTGAGATTGAGCCTCTTTGACTTGTCGGAGAATAGGTTGACCGGGGAAATTCCTCAGGCTCTTACCATTCAAGCTTACAATGGTAGCCTCGCCGGAAACCCTGGACTCTGCAGTGTTGACTTGATCGGTTCATTCCCTCGGTGCTCTAAGGATTCTGGCATGTCAAAAGGTCTACGTACTCTTGTGGTTTGCATTCCAATTGGGTTGGTTGTAGTTATGCTCTGTTTGGCGCTTTACTTGAAGAAGAAGAACAAGAAGAACGTGAAATGTGGAGGAGGAGAGCGTTCTCTTAAAGAGGAGTATTCATGGGACGTAAAATCCTTCCATGTTCTAAGCTTCACCGAAAACGAGATTCTTGATTCGATCAAGCAAGAGAATCTCATTGGAAAAGGAGGTTCAGGTAATGTTTACAGGGTGATATTGTCCAATGGAAAAGAGCTCGCTGTAAAGCATATATGGAATACCGATGTTGATTGGAGGACGAAGAAGTCGAGATCCTGGAGTACTGGTAGTGGCAGTGGAACGCCCATGCTGGCCGGAAAGCGCACTAGGAAGTCGAAGGAGTTTGATGCAGAGGTGCAGGCATTGAGCTCGATAAGGCATGTGAATGTGGTGAAGCTGTATTGTAGCATAACAAGTGAGGATTCTAGTCTTTTGGTGTATGAGTATTTGCCTAATGGAAGCTTGTGGGATAAGTTGCACACCGGTGGGAAGATGGAGCTTGATTGGGAGATAAGGTATGAGATTGCGGTTGGCTCGGCCAAGGGCTTGGAGTACTTGCATCACTCATGTGAGAGGCCTGTTATTCATCGGGATGTTAAGTCCAGTAACATCTTGCTTGATGAGTTCTTGAAGCCTCGGATTGCAGATTTTGGTTTGGCTAAGATTGTTCAAGCTAACGTTGCAAAGGATTCTACTCAAGTCATTGCTGGAACACATGGTTATATTGCTCCTGAATATGGCTACACTTATAAGGTGAATGAGAAGAGTGATGTGTACAGTTTTGGAGTTGTATTGATGGAGCTAGTGACAGGTAAAAGGCCAATTGAAGCAGAATTTGGTGAAAACAAAGACATAGTAAGCTGGGTCCATAGTAAAGCACAGAACAAAGAAATGTTCGGGAGTGTTGTGGATGCAAGAATTCCAGAGATGTATAAAGAAGAAGCTTGCAAAGTGTTAAGAACTGCAGTTATATGCACAGCAACTCTTCCAGCTATGAGGCCTACCATGAGAACAGTGGTTCAAATGCTTGAAGATGCGGAGCCATGTAAATTGGTTGGAATTGTCATAAACAAAGATGGCACTCAAAACAAAATCAGAACCAATGCCAAATAG	2976	0.457	MLPAPSSHHTLLLLFVSSLILAVNSDDRQLLLDFKSTLQSPNPNAFLSWTPDNSVCAFNGVTCDASNSVTGINLSNRSLTGVLDFHNLCRIQSLQTLELGFNSLHGKISDDIRNCTGLKFLDLGNNNFYGTFPDISPLNKLQYLFLNQSGFSGTFPWQSLLNMTDSLLQLSVGDNPFDLTPFPKEVVSLKKLNWLYLSNCSLGGKIPVGIGNLTELTELEFSDNFVTGELPGEIVNLKKLWQLTFYNNSLSGKLPFGFRNLTGLNYFDGSMNKLEGDLTEVKFLTNLVSFQLFENGFGGEIPKEIGEFKSLKALSLYRNKLIGEIPQRLGSWTEFDFVDVSENMLSGPIPPDMCKKGKMTALLVLQNKLTGSIPETYASCNTLNRFRVSNNSLSGSVPGGIWGLPNVDIIDIELNNLEGSVTSDIKSAKKLAQIYARKNRLSGQIPKEISEASLLVTIDLSENQVSGEIPDSIGELKQLGSLYLQKNELTGSIPKSIGSCTTLNDVDLSMNSLSGKIPSSLGSLPALNSLNMSRNQLSGEIPESLALLRLSLFDLSENRLTGEIPQALTIQAYNGSLAGNPGLCSVDLIGSFPRCSKDSGMSKGLRTLVVCIPIGLVVVMLCLALYLKKKNKKNVKCGGGERSLKEEYSWDVKSFHVLSFTENEILDSIKQENLIGKGGSGNVYRVILSNGKELAVKHIWNTDVDWRTKKSRSWSTGSGSGTPMLAGKRTRKSKEFDAEVQALSSIRHVNVVKLYCSITSEDSSLLVYEYLPNGSLWDKLHTGGKMELDWEIRYEIAVGSAKGLEYLHHSCERPVIHRDVKSSNILLDEFLKPRIADFGLAKIVQANVAKDSTQVIAGTHGYIAPEYGYTYKVNEKSDVYSFGVVLMELVTGKRPIEAEFGENKDIVSWVHSKAQNKEMFGSVVDARIPEMYKEEACKVLRTAVICTATLPAMRPTMRTVVQMLEDAEPCKLVGIVINKDGTQNKIRTNAK*	992

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo08g0956	991	Pfam	Leucine rich repeat N-terminal domain	25	64	IPR013210	-
	Amo08g0956	991	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	815	827	IPR008271	GO:0004672\|GO:0006468
	Amo08g0956	991	ProSiteProfiles	Protein kinase domain profile.	669	971	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Amo08g0956	991	Gene3D	Ribonuclease Inhibitor	281	354	IPR032675	-
	Amo08g0956	991	Gene3D	Transferase(Phosphotransferase) domain 1	771	975	-	-
	Amo08g0956	991	SUPERFAMILY	L domain-like	281	593	-	-
	Amo08g0956	991	SUPERFAMILY	Protein kinase-like (PK-like)	657	965	IPR011009	-
	Amo08g0956	991	SMART	serkin_6	669	971	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Amo08g0956	991	PANTHER	RECEPTOR-LIKE PROTEIN KINASE 7	10	976	-	-
	Amo08g0956	991	SUPERFAMILY	L domain-like	40	350	-	-
	Amo08g0956	991	Pfam	Leucine rich repeat	479	537	IPR001611	GO:0005515
	Amo08g0956	991	ProSitePatterns	Protein kinases ATP-binding region signature.	675	697	IPR017441	GO:0005524
	Amo08g0956	991	Gene3D	Phosphorylase Kinase; domain 1	652	770	-	-
	Amo08g0956	991	Pfam	Protein kinase domain	671	962	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Amo08g0956	991	Gene3D	Ribonuclease Inhibitor	355	602	IPR032675	-
	Amo08g0956	991	Gene3D	Ribonuclease Inhibitor	183	280	IPR032675	-
	Amo08g0956	991	Gene3D	Ribonuclease Inhibitor	23	182	IPR032675	-
	Amo08g0956	991	PANTHER	LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED	10	976	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo08g0956	Amo-Chr8	16366042	16369622	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo08g0956	9	980	Receptor kinase-like Gene Family	AT1G09970	60.878	0.0	1139

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-XI-1	Amo08g0956		Pkinase	7.4e-42	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo08g0956	-		-	gmx:100779554	1433.7