Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0951 ATGTCCATAAACGAGGATGATGTGAAGAATGATTCTGATAATGATTTGGGTGATGATTTTGATTATCAACCGAATGCAGAAGATGATGCTGAAGACGACGATGTGGATTCGCTGGATTCTACTAGCAAGAGTGAAGAAGTTTGTGGTGTAAAAAGAATAGCAGATTTAATGGTGGAGGATATTTGGAACCTGGAGTTTAGGACAGAGGATGAGGCTTGCCAGTTTTATAACGCTTATTCTTGTTGGCATGGATTTGTAATGAGGAAGGACGACGTGGTTAGGGATAATCAAGGTAGAATCATTAGCAGGCAACTTGTTTGCAACAAAGAGGGCTGGAGAAATATGAGGTATCTTGATATGGATGATAGATCAAGGGAGGCAAGGTCACTAACGCGAACCAAGTGTCCAGCTCGGCTTAGGGTAAAGCTTGACTACGGCTGCGGTAGATGGAAGGTATCATGTTTTGTGGAATCTCACAACCACGATCTGACGCCACCCCAATTTGCGCATCTGGTACCGGCCAATCGTCGTCTCACTAGGGCAGGGGCTTTGAATATAACGGTACTAAGCACAACCTTGGACAAGGTAGAGTTCAGTGTGACTGCTCTCGGAGACCCGGCCAAAGATCGACGGGTGGAAGTCGATAGAGGTAAGAATATGTTCTCGTGCTCGTGCAAGCTGTTTGAATCACGTGGTATTCCCTGTAGTCATATCTTCTGTGCCATGAAGTTCGAAAACATACTTGAGTTTCCAGATTCGTTGATATACAAAAGGTGGACAAAGAATGCAAAGAACGAATTTATTAGCACAGAAATGCCTGTGAATGATGACATCGAAAGGGTCTTAAAGTTTCGAGTTGGAGCATTGGCATCGAATTGCAACAAGCTGTGTGATATTGCTTGCAAGGATCTTGCAGACTTTGATGAAGTCCAGTCTGAACTTGTCAATTTAGTTATCCGCCTGCAGTCACGCAAACAAGGCAAGTCAACTCCTAATGTTAACGTGGAAGGCATCAACGATCCCTTTGTTGTCAAAAGCAAAGGAGCCCCTTCCAAGAGGTCTTCTTGGAGGAAGAAGAGAGCATGCTCTAATTGCCACAAGTACGGTCATTACTACAAGCGCTGTCCAGATCTGATGCAGCATAGTGTGGAAGGTAACCCTCGCGATCGATCATACGGCAATGCATCAGCCAAGGACTCAGGTTTTAGTCCAGAAAGGTTTGCTAATTCTTCGAGGTCGTTCTCAATTAAGTCCGAACACCACTCAGGACCTAATACCAAGCCTTTTAAAAAGGGTGGAACAAGGAAGTTTACGGCGACGGGTATGAGGAACCGGAAGGGTAAAGACAACACTTTTGTTGAGCGGAGCCTCCATGAAAGCAGCGAATCCATTGACATCGCGTCCACGAATGGTGTTTTCAATAAAAATCTCGACTCGTTAACACAGGTGAAGGAGTCACAGCAGGACAAGAGACATTCATTCACGAACTATGAATGTGATAATGATGTCATTGATGATAAATGTGACACACGACATGTGCAGATCGATGTCCGAGATCAGATCGTACATGGCATTGTTCGCGTCGATGCATAG 1593 0.447 MSINEDDVKNDSDNDLGDDFDYQPNAEDDAEDDDVDSLDSTSKSEEVCGVKRIADLMVEDIWNLEFRTEDEACQFYNAYSCWHGFVMRKDDVVRDNQGRIISRQLVCNKEGWRNMRYLDMDDRSREARSLTRTKCPARLRVKLDYGCGRWKVSCFVESHNHDLTPPQFAHLVPANRRLTRAGALNITVLSTTLDKVEFSVTALGDPAKDRRVEVDRGKNMFSCSCKLFESRGIPCSHIFCAMKFENILEFPDSLIYKRWTKNAKNEFISTEMPVNDDIERVLKFRVGALASNCNKLCDIACKDLADFDEVQSELVNLVIRLQSRKQGKSTPNVNVEGINDPFVVKSKGAPSKRSSWRKKRACSNCHKYGHYYKRCPDLMQHSVEGNPRDRSYGNASAKDSGFSPERFANSSRSFSIKSEHHSGPNTKPFKKGGTRKFTATGMRNRKGKDNTFVERSLHESSESIDIASTNGVFNKNLDSLTQVKESQQDKRHSFTNYECDNDVIDDKCDTRHVQIDVRDQIVHGIVRVDA* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0951 530 Pfam FAR1 DNA-binding domain 74 164 IPR004330 -
Amo08g0951 530 MobiDBLite consensus disorder prediction 403 422 - -
Amo08g0951 530 MobiDBLite consensus disorder prediction 1 42 - -
Amo08g0951 530 SUPERFAMILY Retrovirus zinc finger-like domains 348 380 IPR036875 GO:0003676|GO:0008270
Amo08g0951 530 SMART 26again6 221 248 IPR006564 GO:0008270
Amo08g0951 530 ProSiteProfiles Zinc finger SWIM-type profile. 210 246 IPR007527 GO:0008270
Amo08g0951 530 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 57 181 IPR031052 GO:0006355
Amo08g0951 530 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 198 317 IPR031052 GO:0006355
Amo08g0951 530 ProSiteProfiles Zinc finger CCHC-type profile. 362 377 IPR001878 GO:0003676|GO:0008270
Amo08g0951 530 PANTHER OS03G0181600 PROTEIN 57 181 - -
Amo08g0951 530 PANTHER OS03G0181600 PROTEIN 198 317 - -
Amo08g0951 530 MobiDBLite consensus disorder prediction 386 443 - -
Amo08g0951 530 MobiDBLite consensus disorder prediction 11 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0951 Amo-Chr8 16292915 16295905 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo08g0951 FAR1 9.8e-20 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0951 - - aip:107640898 648.662