Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0915 ATGAGTGTATGCAGGCAAGTTCTAATTCCTGAGGTCTATTACTATTTTCAAAAGCTATATTTCATTATATGTGTATTTTATACATGCATACCACAACTTCTAGTCATTTGTGTTTGCAGATGCAAGAGAACGGATGCAAGCAAGACATTGTTAATGCACCTTGTGATAGCAAGTTTCTACATTAGTGTCCAATGTGGTGTTTTCTTTATTCCTTGCAGAAGCTCTTTATCATATCATGCCAATGCGCGCACTAAGACGTCCGTTTGGCTACTCCTATTTGTTTCTTCTATCTCCCTTACCTCAACACACATGGATGAAAAAGCTAAGTCCTCAGATCATGTTGCTGTCACCATTGACCAGCACAATAACCATCCGAAAACCCCTTCCTCTTCCTCCGTGGACAACAAGCCCCCCAAACAACAACCCTTGAGGGTCAAAACCCTTAATCGGCTCAGCTTCTCGAAGCCCAAATCCAGAATCCTCGACAACATGCTTGGTGTGTTCGCTGGCAATAACGAGGATAAAGAAGATGCACATGGTGGGTTTGGAGATATGGAAGTGGTGCTGTACTTCATATACGGGCTGAGGAAGAGCATAAGGAACTGCATGTGGCTAGGGCTGGTGCTTCTTTCATACTGGAGCGTGGTGTTCGACGACGTGCAGAAGAAGAACCACATGTTCCTGAACAAGGTGTTTCAGGGACTGGTGGCAGTGCTGGTTGGGGCCATCATATGGCTCGTCAAGATTGTTCTGGTGAAGATGCTGGCATCCTCTTTTCATGTGGCCACCTACTTCGACAGGATGAAGGAGAGCGTCTTCCATCACTACATCCTCGACACTCTCTCAGGTCCGCCCATGGAGGACGCGGAGGAGATACTGCAGCAGCACCGCCTGCTCACGGGAGGCGGATCAAAGTCGATGCCTGCCAGGAGTAGGTTGAATAAGCTGAAGGAGAAGCAGGAGAGGTTCGGGGGTTCCAGGAGGATTGACATGGAGAAGCTGAGGGAGCTGAGCATGGAGAGCACTGCATCCGCCTGGAGCGTCAAGAGGCTCGTCAACTATGTTCGCTCTTCCGGCCTCTCCACCATCTCCAGGACCGTCGATGATTTCACCACCGCCGAGTCTGAGATCAACAGTGAATGGGAAGCTAGAAATTGCGCTCAGCGGATTTTCAACAACGTCGCCAAACCTGCTGCCAAGTACATTGAAGAGGAGGATTTGATGAGATTTCTGAAGAGGGTTGAGATACATACTATATTCCCTCTCTTCGAAGGTGCCCTTGAAACAGGGAAGATCAGCAGATCATCATTTAGAAATTGGGTGATTCGAGCATACTACGAACGAAAGGCACTAGCACAATCACTGAATGATACAAAAACAGCAGTGCAGCAGCTTCACAAACTAGCAAGCGCGATAGTTAGTGTGATAATAATCATTGTGATCCTTTTGGTGATGGGAGTGGCTACGCTCAAGATCATATTCTTCTGCATGACGCAAATCGTGTTGATTGGGGTTGCCTTCCAAGGTACCTGCAAGACCGTCTTGGAGGCCATCATCTTCGTCTTTGTCATGCATCCTTTCGACATTGGAGACCGCTGCGTCATTGATGGTGTTCATATGATTGTGGAAGAGATGAATATCTTGTCAACAGTGTTTCTCAGATACGACAACGAGAAAATATACTACCCTAATGCAGTTCTGCTGAATAAGCCAATCAGCAATTTCTACAGGAGTCCGGAGATGTGGGACTCAATTGATTTCACCATTGATGCTTCTACTCCCATGGAGACTATCATTGCACTCAAGAAATCAATACAAATTTACATTGAGAGCAAGCCAAAGTATTGGAATCCAAAGCACAGTGTGATAGCAAAAGAAATACAGAATGTGGACAAGCTGAAGCTGTGCTTGTGTGTGCAACACACAATCAATCATCAGAACTATGGCGAAAGGAGCATTAGGATCACTGAGCTCCTCTTGGAACTCAAAAAGATCTTTGAGATCCATGCTGTCAAGTACAATCTCCTCCCTCAGGAGATCCACATTACCCAGATGAACATGGAAAATAATGGCAGACTTGTCTTTCAATCATGA 2094 0.4604 MSVCRQVLIPEVYYYFQKLYFIICVFYTCIPQLLVICVCRCKRTDASKTLLMHLVIASFYISVQCGVFFIPCRSSLSYHANARTKTSVWLLLFVSSISLTSTHMDEKAKSSDHVAVTIDQHNNHPKTPSSSSVDNKPPKQQPLRVKTLNRLSFSKPKSRILDNMLGVFAGNNEDKEDAHGGFGDMEVVLYFIYGLRKSIRNCMWLGLVLLSYWSVVFDDVQKKNHMFLNKVFQGLVAVLVGAIIWLVKIVLVKMLASSFHVATYFDRMKESVFHHYILDTLSGPPMEDAEEILQQHRLLTGGGSKSMPARSRLNKLKEKQERFGGSRRIDMEKLRELSMESTASAWSVKRLVNYVRSSGLSTISRTVDDFTTAESEINSEWEARNCAQRIFNNVAKPAAKYIEEEDLMRFLKRVEIHTIFPLFEGALETGKISRSSFRNWVIRAYYERKALAQSLNDTKTAVQQLHKLASAIVSVIIIIVILLVMGVATLKIIFFCMTQIVLIGVAFQGTCKTVLEAIIFVFVMHPFDIGDRCVIDGVHMIVEEMNILSTVFLRYDNEKIYYPNAVLLNKPISNFYRSPEMWDSIDFTIDASTPMETIIALKKSIQIYIESKPKYWNPKHSVIAKEIQNVDKLKLCLCVQHTINHQNYGERSIRITELLLELKKIFEIHAVKYNLLPQEIHITQMNMENNGRLVFQS* 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0915 697 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 186 690 IPR016688 -
Amo08g0915 697 Gene3D - 526 575 IPR023408 -
Amo08g0915 697 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 186 690 - -
Amo08g0915 697 MobiDBLite consensus disorder prediction 120 141 - -
Amo08g0915 697 SUPERFAMILY Sm-like ribonucleoproteins 517 575 IPR010920 -
Amo08g0915 697 Pfam Mechanosensitive ion channel 467 670 IPR006685 GO:0016020|GO:0055085
Amo08g0915 697 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 108 165 - -
Amo08g0915 697 MobiDBLite consensus disorder prediction 120 138 - -
Amo08g0915 697 PIRSF Memb_At2g17000 182 694 IPR016688 -
Amo08g0915 697 PIRSF Memb_At2g17000 96 163 IPR016688 -
Amo08g0915 697 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 108 165 IPR016688 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0915 Amo-Chr8 15788184 15795470 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0915 188 686 Mechanosensitive Ion Channel Family AT5G12080 46.955 8.01e-158 472
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0915 K22048 - gmx:100813521 843.573