Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0900 ATGTGTAAGAGAATAATAATAATAATAATGGCAAGGAAATGCACGTATTGTGGGAATTCTGGTCACAATTCAAGGACTTGCAACCACAGTTTCAGTAGTACCACAGGGGGGTGTAGTGGACTAAAGCTCTTTGGGGTACAACTTGATGATAATCAATATTATTCTTCTTCTTCATGCATGGACTACCTGCTATCCTTATCTGCTGCTGCTTCTTTATCATCGTCGCTTGTAGGTGCAAATAAAAATTCACATGAAATATCTTATTCTTACTTAACCTCCGGTGCCAGCAGTAGTGGTCTTATGTCAACGATCAAAGACAATAACAAAGGATTGGCATGGAGTGAGGAGGAGCACCGTATATTCCTAGAGGGGATGGAGAAGCTGGGGAAGGGTAACTGGAGAGGCATATCCAGATGTTTTGTGAGAACCAGAACACCCACTCAAGTGGCCAGCCATGCACAAAAGTATTTTCTCCGTCAGACTCGCCGGCGGAACACTTTCAGATCAAGAAAACACCGCCTCACCCTAGCAAATGAGGGCACTAGGAATAGCGATGCCGTTGTTCTATCTCACTGGCTTGCCTCTGCAACTTCAACAAATTGCACCTCAATTCAAGGCGCAGCAGCTCCTGATTTAGAATTGAAACTTGCAACTCCCTCTCCCTCCCTCTAA 672 0.4435 MCKRIIIIIMARKCTYCGNSGHNSRTCNHSFSSTTGGCSGLKLFGVQLDDNQYYSSSSCMDYLLSLSAAASLSSSLVGANKNSHEISYSYLTSGASSSGLMSTIKDNNKGLAWSEEEHRIFLEGMEKLGKGNWRGISRCFVRTRTPTQVASHAQKYFLRQTRRRNTFRSRKHRLTLANEGTRNSDAVVLSHWLASATSTNCTSIQGAAAPDLELKLATPSPSL* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0900 223 ProSiteProfiles Myb-like domain profile. 105 157 IPR001005 -
Amo08g0900 223 CDD SANT 112 157 IPR001005 -
Amo08g0900 223 Pfam Myb-like DNA-binding domain 112 157 IPR001005 -
Amo08g0900 223 ProSiteProfiles SANT domain profile. 113 161 IPR017884 -
Amo08g0900 223 ProSiteProfiles Zinc finger CCHC-type profile. 12 27 IPR001878 GO:0003676|GO:0008270
Amo08g0900 223 SUPERFAMILY Homeodomain-like 108 162 IPR009057 -
Amo08g0900 223 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 10 173 - -
Amo08g0900 223 SMART sant 109 159 IPR001005 -
Amo08g0900 223 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 108 160 IPR006447 GO:0003677
Amo08g0900 223 Gene3D - 113 163 - -
Amo08g0900 223 PANTHER TRANSCRIPTION FACTOR KUA1 10 173 - -
Amo08g0900 223 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 105 161 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0900 Amo-Chr8 15327313 15328356 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Amo08g0900 Myb_DNA-binding 1.9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0900 - - aprc:113866246 184.496
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g0900 08 15327313 15328356 Amo17g2924 17 131470871 131471905 hybridization