Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0878 ATGGAGGAATACACTAATAATAGCAACAATAATCAAAGCCCAAGTTCAAGTTCAAGGGCAAGTTTCTTGTACTCTTCCTTTGGTGTTGGTGCTGCTACTTCTTCAAGCATACCCCATCACCTTCCAATTAACACCTTTCATCTTCTTCATCATCATCAATCTGAAGCTGCTGCTGGATCCGATCACTGCTTTCAATCCCATCAAGTACCATCCGTCAAAACCGAACCCAGAAACTCCTCGCAGCAGATTTTCAACTATCCTCTCATGAGACCCAATGATCTTCATCATTCGAGCGACCAAGGAGGAACCCAAAACTCCAACGATGATGTTGAAGCCATCAAAGCCAAAATCATCGCCCATCCTCACTACTCTAATCTCTTACAAGCCTACATGGATTGCCAAAAGGTAGGAGCTCCGCCGGAAGTGGTGGCGCGTTTAAGCGCGGCTCGGCAGGAATTCGAGGCACGGCAGCGCTCTATGGTTGGTTCCACCAGGGAAGCTTGCGGCAAGGACCCTGAACTTGACCAATTCATGGAGGCATACTATGATATGCTTGTGAAGTACCGAGAGGAACTTTCAAGGCCTATACAAGAGGCTATGGACTTCATGCGCAGGATTGAAACTCAGCTTAATATGCTTTCCAATGGACCCCTTCGCATCTTCTCTGATGATAAATGTGAAGGAGTGGGTTCATCGGAAGAGGATCAACAAGAAAACAGTGGCGGGGARGAAGAATCAGAAGTAGYGCCGGAGATTGATCCTCGGGCAGAAGACCGTGAACTGAAGAACCACTTGCTTAGAAAGTACAGCGGCTACTTAAGCAGCCTGAAGCAAGAACTGTCAAAGAAGAAGAAGAAAGGAAAACTCCCTAAAGATGCCAGGCAAAAGCTACTTACTTGGTGGGAGCTACATTATAAATGGCCTTATCCTTCGGAATCAGAGAAGGTAGCATTGGCAGAATCAACAGGACTGGATCAGAAGCAAATAAACAACTGGTTCATAAATCAAAGGAAGAGACACTGGAAACCATCTGAAGACATGCAATTCATGGTCATGGATGGACTCCATCCGCATAATAATCATCAGAACGCATCTCCTCTCTACATGGATTCCCATTATGTTATGCCTGATGGACATTACCGCTTACCACCATAA 1155 0.4563 MEEYTNNSNNNQSPSSSSRASFLYSSFGVGAATSSSIPHHLPINTFHLLHHHQSEAAAGSDHCFQSHQVPSVKTEPRNSSQQIFNYPLMRPNDLHHSSDQGGTQNSNDDVEAIKAKIIAHPHYSNLLQAYMDCQKVGAPPEVVARLSAARQEFEARQRSMVGSTREACGKDPELDQFMEAYYDMLVKYREELSRPIQEAMDFMRRIETQLNMLSNGPLRIFSDDKCEGVGSSEEDQQENSGGEEESEVXPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLTWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPHNNHQNASPLYMDSHYVMPDGHYRLPP* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0878 384 SUPERFAMILY Homeodomain-like 281 356 IPR009057 -
Amo08g0878 384 Pfam ELK domain 260 281 IPR005539 GO:0003677
Amo08g0878 384 Pfam KNOX2 domain 169 213 IPR005541 GO:0003677|GO:0005634
Amo08g0878 384 SMART KNOX1_2 111 155 IPR005540 GO:0003677|GO:0005634
Amo08g0878 384 SMART HOX_1 282 347 IPR001356 GO:0003677
Amo08g0878 384 MobiDBLite consensus disorder prediction 222 260 - -
Amo08g0878 384 CDD homeodomain 292 344 IPR001356 GO:0003677
Amo08g0878 384 SMART ELK_2 260 281 IPR005539 GO:0003677
Amo08g0878 384 SMART ELK_2 173 193 IPR005539 GO:0003677
Amo08g0878 384 MobiDBLite consensus disorder prediction 59 87 - -
Amo08g0878 384 Gene3D - 285 347 - -
Amo08g0878 384 ProSitePatterns 'Homeobox' domain signature. 318 341 IPR017970 GO:0000981|GO:0006355
Amo08g0878 384 ProSiteProfiles 'Homeobox' domain profile. 280 343 IPR001356 GO:0003677
Amo08g0878 384 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 1 375 - -
Amo08g0878 384 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 375 - -
Amo08g0878 384 Pfam Homeobox KN domain 300 339 IPR008422 GO:0003677|GO:0006355
Amo08g0878 384 SMART KNOX2_2 164 215 IPR005541 GO:0003677|GO:0005634
Amo08g0878 384 Pfam KNOX1 domain 112 154 IPR005540 GO:0003677|GO:0005634
Amo08g0878 384 MobiDBLite consensus disorder prediction 59 108 - -
Amo08g0878 384 ProSiteProfiles ELK domain profile. 260 280 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0878 Amo-Chr8 15089218 15092621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0878 48 384 Homeobox Transcription Factor Family AT4G08150 67.335 3.90e-143 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Amo08g0878 KNOX2 1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0878 - - gmx:100807602 479.944