Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0877 ATGAATAAATTATTTCGTTTCTTGGTGAATAAAGAGATAAATAATGTGACCCCACAAACCCTCCACCACTCTATCATAATAAATTCTGCCACAACCGCTCTAATTTGCATCCATTCTTGCATCACATTGAATTCATTTCCTAATTCTCAGAATATGATGATGGCCTTCTCTAATAACAATGACCAAGAACTTGGACTTGGTCTTGGTCTTGGTCTTGTTCATGGTGAAAACTGCAGGCAGAAGAAGGAGAAAGAGGAAGAGGATCCATGCAGCAATATTAAGGCATACCCATCTCTTACTTTAGGACCAGAACAGGATTCTAGATCTTCTCAAAGCGCAGTTGTTTCTTCATTTTCCAACTCATCGTCTAGCATCAAGAGGGAGAGAGATCAAGAATTCTTTCTGGACTTATACGAAGAAGAAAACAAGAAGAATAATAATAAGAATGGTAACCCCAGAAAGAAACTTAGGCTCACCAAACAACAGTCTGCACTCTTAGAGGATAGCTTCATACACCACTCTACTCTCAATCCGAAGCAAAAGCAAGAGTTGGCAAAGAAGCTCAATCTGAGAGCGAGGCAAGTGGAGGTGTGGTTTCAGAACAGGAGAGCAAGGACAAAATTGAAGCAAACGGAAGCGGAGTGTGAGATATTGAAGAAGTGGTGTGAGAGGCTAAGAGAAGAGAACAAGAGGTTGCAAAAGGAGCTGCAACATCTAAAATCCATGAAAACAAACAACAAATAA 744 0.4005 MNKLFRFLVNKEINNVTPQTLHHSIIINSATTALICIHSCITLNSFPNSQNMMMAFSNNNDQELGLGLGLGLVHGENCRQKKEKEEEDPCSNIKAYPSLTLGPEQDSRSSQSAVVSSFSNSSSSIKRERDQEFFLDLYEEENKKNNNKNGNPRKKLRLTKQQSALLEDSFIHHSTLNPKQKQELAKKLNLRARQVEVWFQNRRARTKLKQTEAECEILKKWCERLREENKRLQKELQHLKSMKTNNK* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0877 247 Gene3D - 157 207 - -
Amo08g0877 247 ProSiteProfiles 'Homeobox' domain profile. 149 209 IPR001356 GO:0003677
Amo08g0877 247 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 49 105 - -
Amo08g0877 247 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 109 244 - -
Amo08g0877 247 SUPERFAMILY Homeodomain-like 150 217 IPR009057 -
Amo08g0877 247 Pfam Homeodomain 153 207 IPR001356 GO:0003677
Amo08g0877 247 ProSitePatterns 'Homeobox' domain signature. 184 207 IPR017970 GO:0000981|GO:0006355
Amo08g0877 247 SMART halz 209 247 IPR003106 GO:0006355|GO:0043565
Amo08g0877 247 MobiDBLite consensus disorder prediction 102 121 - -
Amo08g0877 247 MobiDBLite consensus disorder prediction 96 121 - -
Amo08g0877 247 CDD homeodomain 152 210 IPR001356 GO:0003677
Amo08g0877 247 Pfam Homeobox associated leucine zipper 209 243 IPR003106 GO:0006355|GO:0043565
Amo08g0877 247 Coils Coil 208 245 - -
Amo08g0877 247 PANTHER - 49 105 - -
Amo08g0877 247 PANTHER - 109 244 - -
Amo08g0877 247 SMART HOX_1 151 213 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0877 Amo-Chr8 15075089 15076388 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0877 54 243 Homeobox Transcription Factor Family AT2G22800 48.077 1.29e-45 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Amo08g0877 Homeodomain 5.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0877 K09338 - gmx:100790927 184.496