Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0866 ATGAGTAGTGATGTTGAAAATGCCATGAGGCTTCAACAGGAAGAGAAAAAGGGCATTCTGTTGGGTTTGGGGACAAGTGGTTCAGAAATGGCAAGTTCTAATTCTGAGCCTTCAAATGTAGCTAATCCCTTTCTTGCTTCCTCTGCTTGGGATCCTCTTACTCCTTTAACTCAACTTCAAACTACTAATACTACTACTCTTGTTGGAGACCCTTCTACTTCAATACCAATACCAATGGTTTCTCATCATAATAATGAATTCTCCAACTCATTGTTGTACACTCTTGTTTTGGAAAACCAGCAAGCTCCTCACATTGTTCAATACATGTCTAGAGATATGGTTCCAAACCCCAAGGTTCAGGTTCCTATATCCTATGGAAGTGGGAGCTTCTCTGAAATGGTTGGCTCCTTTCTCCAATCTCCAAACAGTGAGCATTCACAGGGAGAAGGAGAAGGAGAAGATTCAGGATCAGCACCTAGTGGAAATAGAAGAAGAAAGAGAGGCCATGAACATAACAAGGTATGCAGAGTATTGCACTCACTTAATGCTGAAGATTGTTCTGGGAAGAGCTCTGATGGTAGAAAAGATCAAGATGATGAGAAGAAAGCAAAAGTGGAAGAAAATAAAGACAAAAGTGGTCAAAGTGGAGAAACACCTAAAGAGAATTTCATTCATGTGAGAGCAAGAAGAGGCCAAGCTACTAACAGTCACAGCCTTGCAGAAAGGGTAAGGAGAGAAAAGATTAGTGAGCGAATGAGGTTGCTTCAAGAACTTGTTCCAGGATGCAACAAGATAACTGGCAAAGCAGTGATGCTTGATGAGATTATAAACTATGTGCAATCATTGCAACAGCAGGTTGAGTTTTTGTCCATGAAACTTGCCACTGTGAACCCAGAGCTGAATTTGGACCTAGAGCGGATTCTCTCAAAAGATATTCTGCAATCACGAATTGGTGGATATGGTGGTGGTATAAGCTGCTCTCAAGCATTCCCTAGTTCCAGCTTCCAAGGAACACTAGTGCCCATGCCTACCACTTCAAATCAACTCCCTCCCTTGCCTCAGAGTCTGTTGGACCATGAATTCCAAAACTTGTATGGAATGAGCTATGATTCTAGTACAGCTCTTGGGAACATGGGGCACAATGGAGGATCCAAACCAGAGTTATAG 1167 0.4216 MSSDVENAMRLQQEEKKGILLGLGTSGSEMASSNSEPSNVANPFLASSAWDPLTPLTQLQTTNTTTLVGDPSTSIPIPMVSHHNNEFSNSLLYTLVLENQQAPHIVQYMSRDMVPNPKVQVPISYGSGSFSEMVGSFLQSPNSEHSQGEGEGEDSGSAPSGNRRRKRGHEHNKVCRVLHSLNAEDCSGKSSDGRKDQDDEKKAKVEENKDKSGQSGETPKENFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNLDLERILSKDILQSRIGGYGGGISCSQAFPSSSFQGTLVPMPTTSNQLPPLPQSLLDHEFQNLYGMSYDSSTALGNMGHNGGSKPEL* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0866 388 Pfam Helix-loop-helix DNA-binding domain 235 283 IPR011598 GO:0046983
Amo08g0866 388 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 32 144 IPR024097 GO:0006355
Amo08g0866 388 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 150 388 IPR024097 GO:0006355
Amo08g0866 388 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 150 388 - -
Amo08g0866 388 MobiDBLite consensus disorder prediction 188 223 - -
Amo08g0866 388 Gene3D - 229 304 IPR036638 GO:0046983
Amo08g0866 388 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 230 299 IPR036638 GO:0046983
Amo08g0866 388 MobiDBLite consensus disorder prediction 134 223 - -
Amo08g0866 388 CDD bHLH_AtBPE_like 222 307 - -
Amo08g0866 388 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 232 282 IPR011598 GO:0046983
Amo08g0866 388 SMART finulus 238 288 IPR011598 GO:0046983
Amo08g0866 388 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 32 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0866 Amo-Chr8 14896894 14899125 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0866 41 388 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 44.167 3.77e-75 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo08g0866 HLH 4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0866 - - adu:107461155 678.707