LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo08g0865	ATGAAGTGGATCAACAGTGATAGTAACAATCATCACGCCTGGTTGGGCTTCTCTCTCTCACCCCATCACATGAAATTCGACCTTCCTAATTCTTCTTCTTCTTCTACTACTACTACTTCTTCCTCCTCCTCCTGCGGTGGAGATCACAGTGCTGCCTTTCATTCTCAGTTGAGCGTGATGCCTCTCAAGTCAGACGGTTCACTTTGCATCATGGAAGCTCTCACTAGATCACATCAAACGCAACAAGTGATGGTTGGTAGTTCGTCTCCGAAGCTGGAAGACTTTCTGGGTGGTGCAAGCATGGGAACACACGAAAGAGAGGCCATTGACACTATCTACTACCCTCCTCATAGAGGCTTTCTCTCAGAGCCTTTGAGGCATCCACCATATTACTCCTTTGCCTGCCATGGCATGTACCAAGCACCACCCCCAACAATGCCCCACATAGCAGAAGCAGAAGAAGAAGAAGAAGAAGGCATTGATGGATTCAAGAAGTGGGTGGAGCAGCAGCAGCAGCAACAGTCGCTGAGTCTGTCAATGAGTCCAGGGTCGGAGTCAAGTTGTGTAACAGCTGCGAAGCATGAGAATGGGAAGAGTGAGTCGTCGGTGGTGGCAGTAACAGTAATGGAGAATAGCAACAAGAAGAGAGGGCTAGCTAACAAGCAACCAGTTCACAGAAAATCCATTGACACTTTTGGTCAGAGAACTTCTCAGTATCGAGGCGTCACCAGGCATAGATGGACTGGTAGATACGAAGCACATTTATGGGATAACACTTGCAAGAAGGAAGGCCAAACTAGGAAAGGAAGACAGGTGTATTTGGGGGGTTATGATATGGAACAAAAAGCTGCAAGAGCCTATGATCTTGCTGCCCTTAAGTACTGGGGACCTTCAACCCACATCAATTTTCCGTTGGAAAATTACCAAGCGGAACTTGAGGAGATGAAGAACATGACCAGGCAGGAATATGTCGCCCACTTGAGAAGAAAAAGCAGTGGATTTTCTAGGGGTGCTTCAATATACAGAGGGGTGACAAGACATCATCAACATGGAAGATGGCAAGCAAGGATTGGCAGAGTTGCTGGGAACAAGGACCTTTACCTTGGGACATTCAGCACTCAAGAGGAGGCAGCAGAAGCATATGATGTAGCAGCAATCAAGTTCCGTGGTTCCAATGCAGTTACAAACTTTGACATATCAAGATACGACGTGGAAAGAATCATGGGGAGTAACACTTTGCTTGCAGGGGAGCTAGCTAGGCGAAACAACAAAGATACTGCTATTGACCCACCAAGATGGGAGGCCATTGAATACAACACGAATGTGGAAGCAGTTCAAGCTAGAAACAACAACAATGACAATACTAATAATAACAATGATGTTGATTCAAACTGGAAGATGGTTTCTGGTGGTGCTTTCTCTGTGGGGATACATGATCTGATTGGGATTGAAGGGCAGCAGCCATTGATGGAGGCTTCTTCGCTTGTGACCAGCCTAAGCAGCTCAAGAGAGGCTAGCCCTGAAAAAATAATGGGTCCCTCGTCAATGATGTTTCCAAAACCTCTTCAACTTGAACCCAAGATGGTTCTTAACAACCCCTTAACTAGTACTGGTGTTGTTGGATCTTGGTTCCCTTCTCAAATGAGGCCAGCTTCTTTGTCTCACTTGCCTGTTTTTGCTGCTTGGAACGATACCTAG	1698	0.4635	MKWINSDSNNHHAWLGFSLSPHHMKFDLPNSSSSSTTTTSSSSSCGGDHSAAFHSQLSVMPLKSDGSLCIMEALTRSHQTQQVMVGSSSPKLEDFLGGASMGTHEREAIDTIYYPPHRGFLSEPLRHPPYYSFACHGMYQAPPPTMPHIAEAEEEEEEGIDGFKKWVEQQQQQQSLSLSMSPGSESSCVTAAKHENGKSESSVVAVTVMENSNKKRGLANKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNTCKKEGQTRKGRQVYLGGYDMEQKAARAYDLAALKYWGPSTHINFPLENYQAELEEMKNMTRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGSNAVTNFDISRYDVERIMGSNTLLAGELARRNNKDTAIDPPRWEAIEYNTNVEAVQARNNNNDNTNNNNDVDSNWKMVSGGAFSVGIHDLIGIEGQQPLMEASSLVTSLSSSREASPEKIMGPSSMMFPKPLQLEPKMVLNNPLTSTGVVGSWFPSQMRPASLSHLPVFAAWNDT*	566

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo08g0865	565	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	171	563	-	-
	Amo08g0865	565	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	10	107	-	-
	Amo08g0865	565	PRINTS	Ethylene responsive element binding protein signature	239	250	IPR001471	GO:0003700\|GO:0006355
	Amo08g0865	565	PRINTS	Ethylene responsive element binding protein signature	380	400	IPR001471	GO:0003700\|GO:0006355
	Amo08g0865	565	SMART	rav1_2	238	310	IPR001471	GO:0003700\|GO:0006355
	Amo08g0865	565	SMART	rav1_2	340	404	IPR001471	GO:0003700\|GO:0006355
	Amo08g0865	565	SUPERFAMILY	DNA-binding domain	237	306	IPR016177	GO:0003677
	Amo08g0865	565	Gene3D	AP2/ERF domain	237	306	IPR036955	GO:0003700\|GO:0006355
	Amo08g0865	565	Gene3D	AP2/ERF domain	340	400	IPR036955	GO:0003700\|GO:0006355
	Amo08g0865	565	ProSiteProfiles	AP2/ERF domain profile.	238	304	IPR001471	GO:0003700\|GO:0006355
	Amo08g0865	565	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT ISOFORM X1	171	563	-	-
	Amo08g0865	565	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT ISOFORM X1	10	107	-	-
	Amo08g0865	565	Pfam	AP2 domain	238	296	IPR001471	GO:0003700\|GO:0006355
	Amo08g0865	565	Pfam	AP2 domain	340	390	IPR001471	GO:0003700\|GO:0006355
	Amo08g0865	565	SUPERFAMILY	DNA-binding domain	339	400	IPR016177	GO:0003677
	Amo08g0865	565	CDD	AP2	339	400	IPR001471	GO:0003700\|GO:0006355
	Amo08g0865	565	CDD	AP2	237	304	IPR001471	GO:0003700\|GO:0006355
	Amo08g0865	565	ProSiteProfiles	AP2/ERF domain profile.	340	398	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo08g0865	Amo-Chr8	14875839	14878869	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo08g0865	3	428	AP2-EREBP Transcription Factor Family	AT4G37750	55.464	1.95e-161	470

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-AP2	Amo08g0865		AP2	3.5e-13	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo08g0865	K09285		-	gmx:100802454	607.446

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Amo08g0865	08	14875839	14878869	Amo17g2953	17	131848893	131852093	hybridization
	Amo16g4123	16	153782929	153787508	Amo08g0865	08	14875839	14878869	PCT
	Amo08g0865	08	14875839	14878869	Amo16g4123	16	153782929	153787508	PCT