Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0849 ATGACCATGCAAGAAACAATGCCTACTCCTCCTCCTCTGAAGGTGCTGATTGAAGAGATGGAGTCATCAATGGAAGATGTTCCTTCGGTTTTCATCTGTCCCATCTCGCTGGAGCCAATGAGAGACCCAGTCACACTCTGCACCGGCCAAACCTACGACAGGTCCAACATCCTCAAATGGTTGTCCCTCGGCCACAACACTTGTCCTACCACCATGCAAGACCTTTGGGACCTTTCCCTCACCCCCAACACCACCCTCCACCGCTTCATCCTCACATGGTTCTCTCACAACTATTTCTCCATCAACAAAAGCCTCCAAGACGTTCAAGGCACAGCCTTTCACCTCTTGGAATCACTCAACAAGGTTAAGGGTCAAGCAAGAGTTAAATCCCTCAAGGAACTTCGCCACCTCCTTGATTCTCACGCTTCAATAAGGAAGACAGTTGTGGAACACAACGGACTTGCCTTGGTTTCTTCATTGTTAGGTCCTTTCACTTCCCATGCTGTTGGGTCAGAAGCCGTTGGGATACTCGTGAAGCTGGACTTGAGTTCAGAGGTTAAGAAGAATCTGATGCATCCATCAAAAGTATCGTTATTGGTGGATATCATGAACGAGGGAACCATTGAAACAAAGATGAACTGTGCAAAGTTGATTGAGATATTGTTGTTAGAAGGACACGTGTCAAGCCTGAGTCTGTTGGTTGGTTTGTTGAGGTTAGTTAGAGACAAGAAACACCCAACTGGGGTGGTCTTGAACGGCCTCATACTGATCAAGATGATGTGCAGTTCCCAAGAATCAGTTAGAACTTCCATTGTGAGAATCGGAGCGGTGCCGCAACTGGTGGATCTATTGCCAACACTAAACGATGAGTGCTTGGAAATAGCGCTGTTTATTCTCGAGGTGGTGTCGACGATTCCAGAAGGAAGAATGGCGTTGAAAGATTGTCCCAATGCTGTGCTTAATGTGGTGAAGTTGTTGATGAGAGTCTCTGAGAGGTGCAAGCTATTTGCGCTTTCGATATTGTGGGCTATTTACAAGCTTGCGCCGGAACAATGTGCCTCCGAGGCCGTGGAGGCTGGGTTGGCGGCGAAGCTGCTTCTGGTGATTCAGAGCGGTTGCAACCCTGTTTTGAAGCACATGTCTGCTGAGTTCTTGAAATTGTGCAGTTTGAATTACTCTGCTAGTATCTTCATCTCTAAGTGTATGCTTACCACAACAATACAATGA 1227 0.4711 MTMQETMPTPPPLKVLIEEMESSMEDVPSVFICPISLEPMRDPVTLCTGQTYDRSNILKWLSLGHNTCPTTMQDLWDLSLTPNTTLHRFILTWFSHNYFSINKSLQDVQGTAFHLLESLNKVKGQARVKSLKELRHLLDSHASIRKTVVEHNGLALVSSLLGPFTSHAVGSEAVGILVKLDLSSEVKKNLMHPSKVSLLVDIMNEGTIETKMNCAKLIEILLLEGHVSSLSLLVGLLRLVRDKKHPTGVVLNGLILIKMMCSSQESVRTSIVRIGAVPQLVDLLPTLNDECLEIALFILEVVSTIPEGRMALKDCPNAVLNVVKLLMRVSERCKLFALSILWAIYKLAPEQCASEAVEAGLAAKLLLVIQSGCNPVLKHMSAEFLKLCSLNYSASIFISKCMLTTTIQ* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0849 408 Gene3D - 113 393 IPR011989 -
Amo08g0849 408 CDD RING-Ubox_PUB 31 73 IPR045210 -
Amo08g0849 408 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 107 IPR013083 -
Amo08g0849 408 SMART Ubox_2 30 93 IPR003613 GO:0004842|GO:0016567
Amo08g0849 408 Pfam U-box domain 27 97 IPR003613 GO:0004842|GO:0016567
Amo08g0849 408 SUPERFAMILY RING/U-box 15 97 - -
Amo08g0849 408 ProSiteProfiles U-box domain profile. 26 100 IPR003613 GO:0004842|GO:0016567
Amo08g0849 408 SUPERFAMILY ARM repeat 115 223 IPR016024 -
Amo08g0849 408 SUPERFAMILY ARM repeat 233 392 IPR016024 -
Amo08g0849 408 PANTHER WDSAM1 PROTEIN 13 407 IPR045185 GO:0061630
Amo08g0849 408 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 30 13 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0849 Amo-Chr8 14667221 14668782 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0849 13 408 U-box Gene Family AT3G49810 60.349 1.32e-166 473
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0849 - - aip:107608514 769.229