Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0814 ATGAAGATGATGTTTACCTTGGGATCCTCAGAATATGAAAACAACATAGATTCGGAAGTGAAGGTTCCCATCAAAAAGATTGAGAACATAACAAACAGACAAATTACATTCTCTAAGAGGAGGAATGACCTCGTCAAAAAAGCTTATGAGCTTTCTATTCCCTGTGATGTTGATGTTGCTCTCATCACGTTCTCCCCTTCTGGCAGACCCACTCTCTTCTCTTCCAGTGCAAGGTTCAATTCTTCACTACAAACATTCATTCATTCTTATGGAGTCATTATTAAGTACTCTGAGTAG 297 0.3872 MKMMFTLGSSEYENNIDSEVKVPIKKIENITNRQITFSKRRNDLVKKAYELSIPCDVDVALITFSPSGRPTLFSSSARFNSSLQTFIHSYGVIIKYSE* 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0814 98 SUPERFAMILY SRF-like 21 88 IPR036879 GO:0003677|GO:0046983
Amo08g0814 98 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 20 78 - -
Amo08g0814 98 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Amo08g0814 98 Gene3D - 30 91 IPR036879 GO:0003677|GO:0046983
Amo08g0814 98 PANTHER MADS BOX PROTEIN 20 78 - -
Amo08g0814 98 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 72 IPR002100 GO:0003677|GO:0046983
Amo08g0814 98 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Amo08g0814 98 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Amo08g0814 98 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Amo08g0814 98 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0814 Amo-Chr8 14345291 14345841 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0814 20 88 Type I MADS-box Gene Family AT1G22130 63.768 8.55e-24 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Amo08g0814 SRF-TF 2.1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0814 - - ahf:112705107 108.227