Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0812 ATGGAGACACGCGCCGCCGCAAAGAGAAGAGCCACCGCCCCCACCCAACTTGAGATTCAGCACCTCAAGAAGCAGCGTGTTGTCTTGGCCGAACTCCCCAATTTACCCAACCTCATTCAATCCCCCATCAACAGGAAACCCCATTCCACCATTGAAGCAAAATCACTCAAGTTCCACGATCCCAGTCTTATCGACGCGCCTTATGTTTCCGACATACATAGCTATCTTCATTCAATGGAGATGGAGAAGAAGAGAAGGCCAATGGTTGATTACATTCAAAAAGTTCAGAAAGAAGTTACCGCTAACATGAGAGGTGTATTGGTGGATTGGTTGGTAGAGGTTGCAGACGAGTACAAACTTCTCTCAGAGACTCTTTTTCTCTCTGTTTCTTACATTGATAGATTTCTATCTATAAACCCTGTTTTTCGATCCAAGTTTCAGTTACTCGGTGTTTCCTCCATGCTCATTGCATCGAAGTATGAAGAAATCAACCCTCCCAATGTAGAGGAGTTCTGCTACATCACTGAAGATACATACACGAAATCACAGGTTGTACGGATGGAAGCTGACATACTCAAATCCCTAAAGTTTGAAATGGGGAACCCTACTGTTAAGACCTTTCTATCTATGTATTCAGGAATTGCTTCTATAGATAAAAAAATTAAGAATTCTCAGGTTGAATTTTTGAGCTGCTATCTTGCTGAGCTAAGTCTTTTGGACTATGATTGTGTGAAATTCTTGCCTTCTATGGTAGCTGCTTCGGTTATATTTCTTGCCAGATTTATTATCTGGCCTGTGGTGCATCCTTGGACTTCATCCTTGTGCGAATGCTCCGGTTATACATCGCTTGAACTTAAAGAATGTGTTCTGATCTTACATGACTTGTATTTGTCGAGAAGGGCAGCATCTTTATCAGCTGTTCGGGACAAATACAAGCAGCACAAGTTCAAATGGGTTGCAAATCTGTCTTCCCCACCAAGTATACCAACTTCTTACTTTAAAGAAATGTGA 1011 0.4204 METRAAAKRRATAPTQLEIQHLKKQRVVLAELPNLPNLIQSPINRKPHSTIEAKSLKFHDPSLIDAPYVSDIHSYLHSMEMEKKRRPMVDYIQKVQKEVTANMRGVLVDWLVEVADEYKLLSETLFLSVSYIDRFLSINPVFRSKFQLLGVSSMLIASKYEEINPPNVEEFCYITEDTYTKSQVVRMEADILKSLKFEMGNPTVKTFLSMYSGIASIDKKIKNSQVEFLSCYLAELSLLDYDCVKFLPSMVAASVIFLARFIIWPVVHPWTSSLCECSGYTSLELKECVLILHDLYLSRRAASLSAVRDKYKQHKFKWVANLSSPPSIPTSYFKEM* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0812 336 CDD CYCLIN 103 192 IPR013763 -
Amo08g0812 336 Pfam Cyclin, N-terminal domain 71 199 IPR006671 -
Amo08g0812 336 CDD CYCLIN 202 293 IPR013763 -
Amo08g0812 336 SMART cyclin_7 206 294 IPR013763 -
Amo08g0812 336 SMART cyclin_7 109 193 IPR013763 -
Amo08g0812 336 PIRSF Cyclin_A_B_D_E 2 334 IPR039361 -
Amo08g0812 336 ProSitePatterns Cyclins signature. 104 135 IPR006671 -
Amo08g0812 336 SUPERFAMILY Cyclin-like 202 327 IPR036915 -
Amo08g0812 336 SMART Cyclin_C_2 202 325 IPR004367 -
Amo08g0812 336 PANTHER CYCLINS 50 334 IPR039361 -
Amo08g0812 336 Pfam Cyclin, C-terminal domain 202 324 IPR004367 -
Amo08g0812 336 Gene3D - 71 321 - -
Amo08g0812 336 SUPERFAMILY Cyclin-like 64 199 IPR036915 -
Amo08g0812 336 Gene3D - 85 200 - -
Amo08g0812 336 PANTHER CYCLIN-A3-1-RELATED 50 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0812 Amo-Chr8 14278658 14280207 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0812 3 336 Core Cell Cycle Gene Families AT5G43080 54.023 5.43e-130 373
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0812 K06627 - gmx:547779 438.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g0812 08 14278658 14280207 Amo17g2848 17 130544529 130546658 hybridization