Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0809 ATGAAGATGATGTTCACCTTGAGATCCTCATGTTCTGAATACGAAAACAACACAATTCCGAGGGTTCCTATCAAGAAGATTGAGAACGTAAGAAACAGGCAAATTACATTCTCTAAGAGGAGGAATGGCCTCGTCAAGAAAGGTTATGAGCTTTCTGTTCTTTGTGATGTTGATGTTGCTCTCATCACGTTCTCTCCCTCTGACAGACTCCCTCTCTTTTCTTCCAGCACAACGTTCAATTACCCTGTGGTACAAATATTTTTATTCATTTTTATAGAGTTATTATTAAGCACTCTGAGAGTACAATAA 309 0.3819 MKMMFTLRSSCSEYENNTIPRVPIKKIENVRNRQITFSKRRNGLVKKGYELSVLCDVDVALITFSPSDRLPLFSSSTTFNYPVVQIFLFIFIELLLSTLRVQ* 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0809 102 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Amo08g0809 102 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Amo08g0809 102 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Amo08g0809 102 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 21 76 - -
Amo08g0809 102 SUPERFAMILY SRF-like 21 78 IPR036879 GO:0003677|GO:0046983
Amo08g0809 102 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Amo08g0809 102 PANTHER MADS BOX PROTEIN 21 76 - -
Amo08g0809 102 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 70 IPR002100 GO:0003677|GO:0046983
Amo08g0809 102 Gene3D - 29 87 IPR036879 GO:0003677|GO:0046983
Amo08g0809 102 ProSiteProfiles MADS-box domain profile. 21 77 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0809 Amo-Chr8 14253131 14253700 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0809 21 77 Type I MADS-box Gene Family AT1G22130 71.930 2.54e-24 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Amo08g0809 SRF-TF 5.9e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0809 - - ahf:112705107 96.6709