Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0808 TGGACTGCCGTTTGTTGGCTGGTACGACTTGGCTTACTTCTCTCGTTTATGTATTCTTTAGGCTACCCGTCTGGATCTCATACAACTCTTATGATACTTGCTGTATGTGCTTTGGTCTCTTTGGTGGTTGGAATAGTCATGGAAGGATGGCCCAAGGGTGCACATGATGGACTTGGTATTGTTGCAAGCATATTGCTTGTGGTGTTTGTTACTGCCACTAGTGATTACAGACAATCCTTGCAGTTTAAGGATCTAGATAAAGAGAAGAAAAAAATTGTGGTGCAGGTCACKCGAAATGGTTGTAGACAGAAGCTTTCAATATATGATTTACTTCCTGGGGATATTGTACATCTTAATATTGGAGACCAGGTCCCTGCTGATGGGCTTTTTGTCTCTGGTTTCTCTCTGTTAATAAATGAATCAAGTTTGACTGGAGAGAGTGAACCAGTGAATGTCAGTAACCTAAATCCTTTTCTTCTCTCAGGAACCAAAGTTCAGGATGGATCGTGCAAGATGCTTGTGACAACTGTTGGAATGAGAACCCAGTGGGGTAAACTAATGGCTACTCTAAGTGAAGGGGGAGATGATGAAACTCCACTGCAGGTTAAACTCAATGGTGTAGCTACTATTATTGGGAAAATTGGCCTTTTTTTTGCTGTTGTGACTTTTTCTGTGTTGGTCCAAGGACTGTTCAGCCGCAAGCTGCYAGAAGGATCCCAGTGGACATGGTCTGGTGATGATGCCATGYAAATTGTGGAGTTCTTTGCTATTGCAGTTACTATTGTTGTCGTTGCTGTCCCAGAYGGTTTACCTTTYGCTGTTACATTGAGTCTTGCTTTTGCCATGAAAAAGATGATGAATGATAAGGCACTTGTTCGTAATTTGGCTGCTTGTGAGACAATGGGCTCTGCCACTACTATCTGCAGTGACAAGACTGGCACACTAACTACTAACCATATGACTGTTGTAAAAGCTTGCATATGTGGGAAGATTAAAGAAGTAAAGGGCTCTAAAGTGCCTTCTGATTTCTCATCTGATATTCCTGATTCTGCTGTGACAATTTTACTTCAATCAATATTTAACAACACTGGGGGAGAAGTTGTAAAGAACATGGATGAGAAGGTTGAGATTCTGGGATCCCCGACAGAGACTGCACTCTTGGAATTTGGGCTGTCACTTGGAGGTGATTTCCACAAGGAGCGACAAGCAGTGAAACTTGTGAAAATTGAACCATTTAACTCTCTAAAGAAGCGCATGGGAGTGGTTCTACAGCTTCCTGAAGGTAGCTTCAGAGCACATTGCAAAGGTGCATCTGAAATAATTCTTGCTGCATGTGAAAAGGTTGTGAACTCAAATGGTGAGGTTGTTCCTCTTGAAGAAGACTCTATCAATTACTTGAAGGATACGATCGAAAAATTTGCTGATGAAGCTCTCCGGACCCTTTGCCTTGCATATGTGGATATTGATGATCATTTTTCAGTTGAGACTCCTATCCCCAATAGAGGTTACACATGTATAGGAATTGTGGGTATTAAAGATCCTGTTCGTCCTGGAGTTCGAGAGTCTGTTGCCATTTGTAGGTCAGCTGGTGTTACTGTTAGGATGGTTACTGGAGACAACATAAACACTGCAAAGGCTATTGCTAGAGAATGTGGAATTTTAACGGATGGAATTGCAATTGAAGGCCCTGAGTTCCGTGAAAAGAGTGAAGAAGAATTGCTTAAAATAATTCCAAAACTTCAGGTGATGGCTCGATCTTCTCCCATGGATAAGCATTCCCTGGTGAAACAATTGAGGACAACGTTTGAAGAGGTTGTTTCAGTTACCGGTGATGGTACAAATGACGCACCTGCACTTCATGAAGCAGATATTGGGCTTGCAATGGGCATTTCCGGAACTGAGGTGGCAAAAGAAAGCGCTGATGTCATAATACTGGATGATAATTTTTCAACTATTGTGACTGTGGCCAAATGGGGCCGATCTGTCTACATAAACATACAGAAATTTGTGCAGTTCCAGCTAACTGTAAACATTGTTGCTTTGATTGTCAACTTCTCGTCTGCCTGTTTGACTGGAAATGCTCCCCTCACTGCTGTTCAACTTCTATGGGTCAACATGATTATGGACACTCTTGGAGCACTTGCTCTAGCCACTGAACCTCCTACTGATGATTTGATGAAAAGACCACCTGTCGGTAGGAAAGGAAACTTTATCAGTAATGTGATGTGGAGGAATATCTTGGGGCAGTCTGTATATCAGTTTGCTGTACTTTGGTTCCTCCAGACAAGAGGAAAAGCAGCTTTTCATCTTGATGGACCAGATTCAGAATTGATATTGAATACACTCATTTTCAACTCATTTGTGTTCTGTCAGGTTTTCAATGAGATCAGTTCCAGAGATATGGAGAAGATTAATGTTTTTGAAGGTATATTGAAGAATTATGTGTTTGTAGCGGTCCTCACTTGCACTGTCATCTTCCAAATCATAATTGTCGAATTTTTGGGCACCTTTGCAAACACCTCCCCACTTACCTTGAAGCAGTGGTTTGGTAGTGTTTTCTTTGGAGTCCTTGGAATGCCAATTGCAGCAGCTTTAAAAATGATACCTGTGGGATCTACCTAA 2622 0.4172 WTAVCWLVRLGLLLSFMYSLGYPSGSHTTLMILAVCALVSLVVGIVMEGWPKGAHDGLGIVASILLVVFVTATSDYRQSLQFKDLDKEKKKIVVQVTRNGCRQKLSIYDLLPGDIVHLNIGDQVPADGLFVSGFSLLINESSLTGESEPVNVSNLNPFLLSGTKVQDGSCKMLVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAVVTFSVLVQGLFSRKLXEGSQWTWSGDDAMXIVEFFAIAVTIVVVAVPDGLPFAVTLSLAFAMKKMMNDKALVRNLAACETMGSATTICSDKTGTLTTNHMTVVKACICGKIKEVKGSKVPSDFSSDIPDSAVTILLQSIFNNTGGEVVKNMDEKVEILGSPTETALLEFGLSLGGDFHKERQAVKLVKIEPFNSLKKRMGVVLQLPEGSFRAHCKGASEIILAACEKVVNSNGEVVPLEEDSINYLKDTIEKFADEALRTLCLAYVDIDDHFSVETPIPNRGYTCIGIVGIKDPVRPGVRESVAICRSAGVTVRMVTGDNINTAKAIARECGILTDGIAIEGPEFREKSEEELLKIIPKLQVMARSSPMDKHSLVKQLRTTFEEVVSVTGDGTNDAPALHEADIGLAMGISGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNIVALIVNFSSACLTGNAPLTAVQLLWVNMIMDTLGALALATEPPTDDLMKRPPVGRKGNFISNVMWRNILGQSVYQFAVLWFLQTRGKAAFHLDGPDSELILNTLIFNSFVFCQVFNEISSRDMEKINVFEGILKNYVFVAVLTCTVIFQIIIVEFLGTFANTSPLTLKQWFGSVFFGVLGMPIAAALKMIPVGST* 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0808 873 Pfam haloacid dehalogenase-like hydrolase 506 623 - -
Amo08g0808 873 CDD P-type_ATPase_Ca_PMCA-like 28 742 - -
Amo08g0808 873 PANTHER CALCIUM-TRANSPORTING ATPASE 27 871 - -
Amo08g0808 873 Gene3D - 30 867 - -
Amo08g0808 873 ProSitePatterns E1-E2 ATPases phosphorylation site. 310 316 IPR018303 -
Amo08g0808 873 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 250 330 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo08g0808 873 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 575 690 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo08g0808 873 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 402 555 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo08g0808 873 Gene3D - 79 191 - -
Amo08g0808 873 SFLD p-type atpase 290 661 IPR044492 -
Amo08g0808 873 SUPERFAMILY Calcium ATPase, transmembrane domain M 28 869 IPR023298 -
Amo08g0808 873 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 26 870 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Amo08g0808 873 PRINTS P-type cation-transporting ATPase superfamily signature 609 628 - -
Amo08g0808 873 PRINTS P-type cation-transporting ATPase superfamily signature 633 645 - -
Amo08g0808 873 PRINTS P-type cation-transporting ATPase superfamily signature 139 153 - -
Amo08g0808 873 PRINTS P-type cation-transporting ATPase superfamily signature 507 518 - -
Amo08g0808 873 PRINTS P-type cation-transporting ATPase superfamily signature 308 322 - -
Amo08g0808 873 PRINTS P-type cation-transporting ATPase superfamily signature 529 539 - -
Amo08g0808 873 Pfam E1-E2 ATPase 92 286 - -
Amo08g0808 873 PANTHER CATION TRANSPORTING ATPASE 27 871 - -
Amo08g0808 873 Gene3D - 318 514 IPR023299 GO:0000166
Amo08g0808 873 Pfam Cation transporting ATPase, C-terminus 694 868 IPR006068 -
Amo08g0808 873 SFLD Haloacid Dehalogenase 290 661 - -
Amo08g0808 873 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 314 519 IPR023299 GO:0000166
Amo08g0808 873 Pfam Cation transport ATPase (P-type) 370 448 - -
Amo08g0808 873 Gene3D - 305 654 IPR023214 -
Amo08g0808 873 SUPERFAMILY Calcium ATPase, transduction domain A 93 188 IPR008250 -
Amo08g0808 873 PRINTS H+-transporting ATPase (proton pump) signature 609 625 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo08g0808 873 PRINTS H+-transporting ATPase (proton pump) signature 466 484 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo08g0808 873 PRINTS H+-transporting ATPase (proton pump) signature 641 666 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo08g0808 873 SUPERFAMILY HAD-like 306 714 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0808 Amo-Chr8 14224148 14231753 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0808 28 872 Primary Pumps ATPases AT1G27770 82.151 0.0 1414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0808 K01537 - gmx:100810758 1513.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g0808 08 14224148 14231753 Amo17g2873 17 130788151 130794219 hybridization