Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0805 CTAACTTTCTGGGGAACGAAAATTTTTTATAGCCTTCCACCAGGCATGAAGACGTTTCCTCCCTCCGACACCTTTTACTGGTACAAGAATGAAGACGTTTCCTCGTACCGAAGTGGCTTGGAGCTGTGGAACCATCATCATCATCATCACCAACCGGAACACGACCTCATACCTCAACTTCGCGGCTGCTCTAGGAGTGGGTCCAACCACCGTGTCACCCTCGAGATCGGCCTTCCTGGTGACGGCGTCGGCCGTGGGGAGCGGAGCAGCAAGTGGAGCAGGACATGCTGCAAGAGCTGTGGCTTCGATTGCCAAACTCATGTGAAGAGCACTTGGGTTCCCGCTTCCAAGCGCTGCGAGAGGCAGCAACAACTCACCTCTATCCAACAACAGCTTCTTGCTGCTGATGTTCCCAAGCGCCAAAGAGATCATGCCTGGGGTAATTTGGGAATTTTATTAAAAAGTCAACGAAAAATCACGGTTTGGGTACTATTATCACACGGAACCCATCTTTTATGGGTACAACTTTTCATCTCATTATTTTGCTTTATCTCCAGGATCATTCAAATCAAAGCTAAGTCCACATACATGGAAAACCATTGA 603 0.4859 LTFWGTKIFYSLPPGMKTFPPSDTFYWYKNEDVSSYRSGLELWNHHHHHHQPEHDLIPQLRGCSRSGSNHRVTLEIGLPGDGVGRGERSSKWSRTCCKSCGFDCQTHVKSTWVPASKRCERQQQLTSIQQQLLAADVPKRQRDHAWGNLGILLKSQRKITVWVLLSHGTHLLWVQLFISLFCFISRIIQIKAKSTYMENH* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0805 200 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 94 144 IPR007818 GO:0003700|GO:0006355
Amo08g0805 200 PANTHER PROTEIN SHI RELATED SEQUENCE 7 94 144 - -
Amo08g0805 200 Pfam Domain of unknown function (DUF702) 93 138 - -
Amo08g0805 200 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 93 118 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0805 Amo-Chr8 14175775 14178300 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0805 94 143 C2H2 Transcription Factor Family AT5G66350 72.549 5.20e-17 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Amo08g0805 DUF702 4.3e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0805 - - adu:107462205 251.521