Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0794 ATGGCATTGGACCCAGATATTGAAGAAAAGTATGTTCACAACAGCAAGGTCATGCTAGGATCTGCAATTCTTCTCGTTATACTCATCCTCGTAATCATCCTATATCGTTCTTATGCTCACTTCTGCGCACGCCGCCGCCGCCATCTCTTCCCTCACACTCTTCCAGCTTCTTCCACTTCCGCCACCGCCCCTGTTTTCAACGACCGACTGGATCCAACCATTCTCAAGTCCCTACCGACCTTTACTTTCTCCTCCGCCGTGCACCGCCCCCTGCAAGACTGCGCCGTCTGCCTTTCGGAGTTCGAAGACGGAGACAAGGGCCGTGTGCTGCCGAATTGCAGCCACGCGTTCCACTGCCAATGCATCGACGCGTGGTTCGCATCTCACTCCAACTGCCCTCTCTGCCGGTCACCGGTTAAACGGGTTACCACRCCGGTTGAAGCGTGCTCGATTCCGGTTTCAGTTGAATTAGCGGTTGAAKTGGAAGCTGGTGGTTGCTCGTCGCTTCCTCCGCCGGTGATGTGCCCTAGGAAGCCGTTGAATGTGGTGGTGGAGATTCCGGAAGAGGAGAGAGGGTTGGATCATCGGATTCTTTCGCTGAAGAAGTTTTGCAGCGTGTAG 621 0.5427 MALDPDIEEKYVHNSKVMLGSAILLVILILVIILYRSYAHFCARRRRHLFPHTLPASSTSATAPVFNDRLDPTILKSLPTFTFSSAVHRPLQDCAVCLSEFEDGDKGRVLPNCSHAFHCQCIDAWFASHSNCPLCRSPVKRVTTPVEACSIPVSVELAVEXEAGGCSSLPPPVMCPRKPLNVVVEIPEEERGLDHRILSLKKFCSV* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0794 206 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 142 IPR013083 -
Amo08g0794 206 Pfam Ring finger domain 93 136 IPR001841 -
Amo08g0794 206 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 9 154 - -
Amo08g0794 206 PANTHER RING-H2 FINGER PROTEIN ATL64 9 154 - -
Amo08g0794 206 SUPERFAMILY RING/U-box 74 142 - -
Amo08g0794 206 ProSiteProfiles Zinc finger RING-type profile. 94 136 IPR001841 -
Amo08g0794 206 SMART ring_2 94 135 IPR001841 -
Amo08g0794 206 CDD RING-H2_PA-TM-RING 93 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0794 Amo-Chr8 14106713 14108339 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0794 9 140 Rapid Response to Elicitors AT3G16720 42.466 1.92e-32 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0794 - - gmx:100800433 236.113