Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0788 ATGGCACTAGAAGCTCTGAAATCCCCTACCGCTGCAGGATCTTCCTTCAGCTTTGAGGAAACCAATAATCTCAGCTACTTGGAAGCACCCTGGGCTAAGAGAAAGCGTTCGAAGCGTGCCAACAGAATGGAACTGCCCCATAACTGCTCCGAGGAAGAGTACCTCGCTCTCTGCCTCATCATGCTTGCTCGCGGCACGACTACCGTCCCCACAGTCACAGCCACCGCCACTGCTGTCCAATCCAAGCCTCACTGCTCTCCTGCTCCATCTGTTGATGAGTCGGCTCCAATTCCAACCGCCAATCTCACCTACAAGTGCTCTGTCTGCAACAAAGCTTTCTCATCTTATCAGGCACTCGGTGGACACAAGGCCAGCCACCGCAAGTTCGCTACTGCCGCCGTTGGCGGCGAAGACCGTCACTCGACCTCCTCCGCCGTCACCAACAGTTCCGTTTCCAAAGCATCCAACTGTGGAGGCAAGGCTCACGAGTGTTCCATCTGCCATAAGTCTTTCCCAACAGGACAGGCTTTGGGAGGACACAAGCGTTGCCACTACGATGGCGGCGCCGCTGCATCTGCATCCGCCGCTGCTGGCAGTGCCGTTACTACTTCAGAAGGGGTTGGGTCTACTCACACTGTTAGTCATCGCGACTTCGATCTGAACTTGCCTGCTTTTCCAGATTTGTCCAACAAGTTCTTCGTGGAGGACGAGGTTTCCAGCCCTCTGCCGATGAAGAAGCCCCGTCTCTTGACCCTACCGAAGATTGAAATCCCTCGATTCCATTAA 786 0.5471 MALEALKSPTAAGSSFSFEETNNLSYLEAPWAKRKRSKRANRMELPHNCSEEEYLALCLIMLARGTTTVPTVTATATAVQSKPHCSPAPSVDESAPIPTANLTYKCSVCNKAFSSYQALGGHKASHRKFATAAVGGEDRHSTSSAVTNSSVSKASNCGGKAHECSICHKSFPTGQALGGHKRCHYDGGAAASASAAAGSAVTTSEGVGSTHTVSHRDFDLNLPAFPDLSNKFFVEDEVSSPLPMKKPRLLTLPKIEIPRFH* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0788 261 SMART c2h2final6 104 126 IPR013087 -
Amo08g0788 261 SMART c2h2final6 162 184 IPR013087 -
Amo08g0788 261 ProSitePatterns Zinc finger C2H2 type domain signature. 106 126 IPR013087 -
Amo08g0788 261 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 1 252 IPR044653 GO:0003700
Amo08g0788 261 ProSiteProfiles Zinc finger C2H2 type domain profile. 162 184 IPR013087 -
Amo08g0788 261 PANTHER ZINC FINGER PROTEIN ZAT10 1 252 - -
Amo08g0788 261 SUPERFAMILY beta-beta-alpha zinc fingers 103 184 IPR036236 -
Amo08g0788 261 Gene3D Classic Zinc Finger 102 184 - -
Amo08g0788 261 Pfam C2H2-type zinc finger 161 186 - -
Amo08g0788 261 Pfam C2H2-type zinc finger 104 128 - -
Amo08g0788 261 ProSitePatterns Zinc finger C2H2 type domain signature. 164 184 IPR013087 -
Amo08g0788 261 ProSiteProfiles Zinc finger C2H2 type domain profile. 104 126 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0788 Amo-Chr8 13972059 13973486 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0788 1 257 C2H2 Transcription Factor Family AT1G27730 47.893 3.52e-58 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo08g0788 zf-C2H2_6 5.6e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0788 - - aip:107606374 460.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g0788 08 13972059 13973486 Amo17g2862 17 130702994 130704172 hybridization