Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0782 ATGGAGATCTTCTATGACGATCACCATGATTTCTTAGAGGAACTCATGGCTCTAAGAAGAGAAACATTCACGGAAACCAATTACAACAACACCACCACTTTTCATTCTTCTTTTCCCCCAAACTCTTCTTCTTCTTCTTACCAACAAGAAGATCTTATTCTTTCTCATCAAATTTATGACGACAACAACTTCTTCAACCAAATATATGATTCCTTGTTGTTTGACGAACAATCTCCGCCGCCATTGATGATGGATCATTATTCTTCTTCCTCGTACTACAGTAATAACACCAGCAGCAACCTTGATTCTTATTATCCTCCATTGTCGTTCATGGAAGAAGAGGAGCTTCAGAATTTGGAGATTGAAACGGCAACAAGGTGTAAAGTGGAGCCAGTAGTAACTGTAACTTGCTGTGATTCTGAGTCCCCTGCTGCGATTTTCAACGCAGATTCTGTCATGGGAAATAAGGAAATTAGAAAGAACAACAGGTCAACAAAGAAGGTTGTGGGTCAACCCTCCAAGAATCTTATGGCGGAAAGGAGAAGAAGAAAGAGACTTAATGATAGACTCTCAATGCTAAGAGCCATTGTCCCCAAGATTAGTAAGATGGATAGAACATCAATACTTAGAGACACCATTGATTACATAAAAGAGCTTCTAGAGAAGATCAACAATTTGCAACAAGAAGCTGTAAAAGTTGAAGATTCAAACATGGCAGGTGGCATTTTCAAAGATGTAATTAAACCAAATGAAATCTTGATTAGAAATTCACCCAAGTTTGAGGTTGAGAGGGGTGTGGATAATACAAGGGTTGAGATTTGCTGTGCGGGGAAGCCAGGAATGTTGCTTTCAACAGTTAACACCTTGGAAGCATTAGGCCTTGACATTCAACAATGTGTTATAAGCTGTTTCAATGATTTCACAATGCACGTTTCTTGCTCAGAGGAACCAGAGCAAAGGGCAATGCTGAGTTCTGAAGATATAAAGCAAGCGTTATTTAGAAGTGCTGGATACGGAGGAAGATGCTTGTGA 1032 0.3953 MEIFYDDHHDFLEELMALRRETFTETNYNNTTTFHSSFPPNSSSSSYQQEDLILSHQIYDDNNFFNQIYDSLLFDEQSPPPLMMDHYSSSSYYSNNTSSNLDSYYPPLSFMEEEELQNLEIETATRCKVEPVVTVTCCDSESPAAIFNADSVMGNKEIRKNNRSTKKVVGQPSKNLMAERRRRKRLNDRLSMLRAIVPKISKMDRTSILRDTIDYIKELLEKINNLQQEAVKVEDSNMAGGIFKDVIKPNEILIRNSPKFEVERGVDNTRVEICCAGKPGMLLSTVNTLEALGLDIQQCVISCFNDFTMHVSCSEEPEQRAMLSSEDIKQALFRSAGYGGRCL* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0782 343 PANTHER DNA BINDING PROTEIN 14 343 - -
Amo08g0782 343 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 170 219 IPR011598 GO:0046983
Amo08g0782 343 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 173 232 IPR036638 GO:0046983
Amo08g0782 343 Coils Coil 209 236 - -
Amo08g0782 343 CDD ACT_UUR-ACR-like 269 332 - -
Amo08g0782 343 Gene3D - 158 237 IPR036638 GO:0046983
Amo08g0782 343 Pfam Helix-loop-helix DNA-binding domain 176 219 IPR011598 GO:0046983
Amo08g0782 343 SMART finulus 176 225 IPR011598 GO:0046983
Amo08g0782 343 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 14 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0782 Amo-Chr8 13893827 13896368 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0782 163 343 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 61.878 2.70e-68 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo08g0782 HLH 1.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0782 - - gmx:100812578 328.561