Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0763 ATGGGGCGTGTGAAATTGGAGATAAAAAGAATAGAGAATACCACAAATCGACAAGTTACATTCTCAAAACGTAGAAATGGTCTCATCAAGAAAGCATATGAGTTATCCATCCTTTGTGACATTGATATTGCACTTATCATGTTCTCTCCCTCTGGTCGTCTCAACCATTTCTCTGGCAAAAGGAGTGCTGTAAATTTTCCTGAGCCACACTATGGCAGGTATTCTCTAAAGATTAAAAATACTTCCTCTTATCTACCACACACACACATATATATACATATGTATATATATATATTTTATTTTTATACCATTATTTTTTATTTGCTCCGGACCCTTCAACAATTGAGGAATGAGAATGACATAGCTCTTCAACTAGCCAATCCGGGAGTCATTAACTCTGAGATTGAAGAACTCCAACAAGAAGTTAGTAGGCTACATCAACAACTTCAACTGGCTGAAGACCAGATAAGGGCWTATGAACCCGATCCATTAAAGATGACATCTATGGAGGAGCTGGAATCTGGTGAAAAGAATCTTATGGAGACTTTGACTCGCGTCATGCAAAGAAAGGAATATCTATTGAGCAGCCATTTGCCTACTTATGATCCATCAACTATTCAGGGGATGGCATCAACTTTTGAGAATGTCGGATGGTTGCAAAATGGCACCCAAAACCCCAACCAAATATTTGATGCATCTACTCCTTTGGATCCACTCAGGGATTTGCAATCGTCAATTTATGATCCATTTCCACAAGGAACAAATTCACAAAGCGATACAAGARACATTGGAGAGTGTCACGTGACAAATCAGAATGACACGTGGCCTCAAGGATACACGTTATACTCTCATATGCAGCATGAGATGGTGGGACCTGACGTGTCSAATATGATGACGACACATGGACAAATGAATCTTCCAATCACAGCCTCCAATTTGCAACCATCCAACAATGAAGCCGGAGAATATGACTGTAAACCTCAAAATCAACTTAACACACAATAA 1005 0.391 MGRVKLEIKRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLNHFSGKRSAVNFPEPHYGRYSLKIKNTSSYLPHTHIYIHMYIYIFYFYTIIFYLLRTLQQLRNENDIALQLANPGVINSEIEELQQEVSRLHQQLQLAEDQIRAYEPDPLKMTSMEELESGEKNLMETLTRVMQRKEYLLSSHLPTYDPSTIQGMASTFENVGWLQNGTQNPNQIFDASTPLDPLRDLQSSIYDPFPQGTNSQSDTRXIGECHVTNQNDTWPQGYTLYSHMQHEMVGPDVSNMMTTHGQMNLPITASNLQPSNNEAGEYDCKPQNQLNTQ* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0763 334 MobiDBLite consensus disorder prediction 307 334 - -
Amo08g0763 334 Gene3D - 13 76 IPR036879 GO:0003677|GO:0046983
Amo08g0763 334 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Amo08g0763 334 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Amo08g0763 334 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Amo08g0763 334 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL104 1 285 - -
Amo08g0763 334 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Amo08g0763 334 Coils Coil 135 155 - -
Amo08g0763 334 SUPERFAMILY SRF-like 2 66 IPR036879 GO:0003677|GO:0046983
Amo08g0763 334 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Amo08g0763 334 Pfam K-box region 134 198 IPR002487 GO:0003700|GO:0005634|GO:0006355
Amo08g0763 334 CDD MADS_MEF2_like 2 58 IPR033896 GO:0000977|GO:0045944
Amo08g0763 334 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Amo08g0763 334 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 285 - -
Amo08g0763 334 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0763 Amo-Chr8 13412749 13416359 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0763 1 326 Type I MADS-box Gene Family AT1G22130 49.563 1.39e-95 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Amo08g0763 K-box 3.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0763 - - adu:107460753 581.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g0763 08 13412749 13416359 Amo17g2849 17 130547116 130570246 hybridization