Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0748 ATGGATATATTTGAGACATTCCCACAAGTTAGCATGTGGGGTGACAACTTTAAGGTTGATGGTGGCCTCATAAATTCAATCACTTCTCCAATGTTGTTGATGAGCACAAGCACCATGGCCATGGATAACAAGCCTGAATATGTTCCACATGAATTGAGGGAACAATCTAGACAAAATCAAGAGGCTACCAATAAAGATGTTAGTAAGGTACTAAGACGGCTAGCTCAGAATCGAGAGGCAGCTCGGAAGAGCCGACTGCGAAAAAAGGCTTATGTTCAACAATTAGAAACAAGCCGTTTGAAGCTCATGCAATTGGAGGAGGAGATTGTTAAAGCCAAAAAGCAGAGTATGTATATTGGAAACAATCCATTGGATGCTAGTTATATGGGATCTTCTGGATCATTAAACTCAGGGATTGTTTTGTTTGAAATTGAATATGGAAATTGGATTGAAGAGCAACACAAACTGAATGAAGAACTCAGAAATGCATTCCAAACTCAAGCACCTGATGAACAACTCAATCAACTTGTTCAAACTCTGTTGAATCATTACTCAAATCTTTTCAAGATGAAATCAGATGCTGCAAAGGCTGATATATTCTACCTAATCAGTGGTGTCTGGAAATCATCCGCGGAGCGCCTTTTCCTTTGGATCGGAGGATCTCGCCCTTCGCAGCTTCTAAGTATCATTGTGCCACAGCTTGAACCTTTAACTGAACAACAAACTGCTAGCATTAGCAGACTCCGGCTATCGTCGCAACAAGCCGAAGATGCTCTCTCACAAGGACTGGATAAACTCCAGCAGAGTCTTGTCCACAACATTGCAGTTGATCCATTGGTAGCAGGAAACTTTGGGTTTCAGATGGCTGATTCCATTGAGAAAATTGAGGGACTTGAAGGCTTCCTTAACCAGGCAGATCATCTTAGGCAACAGACACTGATACACATGTCAAGGATCCTAACAACACATCAAGCTGCTCAAGGATTGCTGGCTTTGGGGCAATACTTGCAAAGACTTCGTTCTCTTAGTTCTCTTTGGGCTTCTCGTCCATCTCAACCTCTCTAG 1065 0.4225 MDIFETFPQVSMWGDNFKVDGGLINSITSPMLLMSTSTMAMDNKPEYVPHELREQSRQNQEATNKDVSKVLRRLAQNREAARKSRLRKKAYVQQLETSRLKLMQLEEEIVKAKKQSMYIGNNPLDASYMGSSGSLNSGIVLFEIEYGNWIEEQHKLNEELRNAFQTQAPDEQLNQLVQTLLNHYSNLFKMKSDAAKADIFYLISGVWKSSAERLFLWIGGSRPSQLLSIIVPQLEPLTEQQTASISRLRLSSQQAEDALSQGLDKLQQSLVHNIAVDPLVAGNFGFQMADSIEKIEGLEGFLNQADHLRQQTLIHMSRILTTHQAAQGLLALGQYLQRLRSLSSLWASRPSQPL* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0748 354 Pfam bZIP transcription factor 69 102 IPR004827 GO:0003700|GO:0006355
Amo08g0748 354 SUPERFAMILY Leucine zipper domain 69 105 IPR046347 GO:0003700|GO:0006355
Amo08g0748 354 Coils Coil 88 115 - -
Amo08g0748 354 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 72 87 IPR004827 GO:0003700|GO:0006355
Amo08g0748 354 PANTHER FACTOR TGA7, PUTATIVE-RELATED 1 351 - -
Amo08g0748 354 Pfam Seed dormancy control 158 231 IPR025422 GO:0006351|GO:0043565
Amo08g0748 354 ProSiteProfiles DOG1 domain profile. 139 349 IPR025422 GO:0006351|GO:0043565
Amo08g0748 354 SMART brlzneu 65 125 IPR004827 GO:0003700|GO:0006355
Amo08g0748 354 Gene3D - 68 119 - -
Amo08g0748 354 PANTHER TRANSCRIPTION FACTOR TGA9 1 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0748 Amo-Chr8 13218799 13221597 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0748 1 353 Calmodulin-binding Proteins AT1G77920 53.168 7.95e-125 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Amo08g0748 DOG1 3.6e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0748 K14431 - gmx:100794268 469.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g0748 08 13218799 13221597 Amo17g2813 17 129904004 129906790 hybridization