Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0737 ATGCCTCGCCGTAGTGCTCCGTCCTCATCATTGCCGCCGAGGCCAACACCAATTCCCGCCAAATTCTGGCGCGCATGTGCTGGAATCTCTGCGKAGGCACCAGTAGTGAACTCTAGGGTTTACTACTTTCCACAGGGACACATCGATCAAGCTGCTTCGCAACCGCGAAACCTTTCACCTCTGGTTTACTCCAGGCCGGTCATCCCTTGCCGTGTCGCCGCCGTCAACTACTTCGCGGACCCTAACACCGACGAGGTCTTCCTCAAGATTCTTCTTGTTCCTGTCACCGATGGATCCGCTCAAGATTTTCTTCCACCTGCCGTCGCCGCCGAAGGCAACAGTGGCAACGGCATTGGCGACGATGAAGAGGTTGCGTCGTACGCCAAGATTCTCACGCGGTCCGATGCGAATAATGGCGGAGGGTTTTCGGTGCCGAGATCCTGTGCGGACTTGGTCTTCCCGCCGTTGAACTTTGAAGAGGACCCGCCGGTGCAGAACCTTAGAATAACCGATCTACACGGCGCCGTATGGGAGTTTCGCCACATCTACCGCGGGACTCCGAGACGGCACCTCTTCACATCTGGCTGGAGCAAGTTCGTTAACAGTAAGAAGATTATCTCCGGCGATACTGTGGTTTTCATGAAGGACTCCGATGGGAGGATGTTCGTCGGGCTCCGCCGCAATATGTCGCTGGACGACGATATCGCAGATGGTGGGTTGGATTGGTTTGCAGCTATGGACGAGGGCGAAGGAGAAAAAGAAGAGGAAGAAAAAGAAGAGGTGATGACGGAGGGATTTGCAAGAAACGGGAAGGGGAGAGTGACTTCGACATCGGTGGCAGAGGCGATGGAGCTGGCAGCTCAAAACAAGCCGTTCGAAGTTGTTTACTATCCAAGCGTGAGTTGGGGGGAGTTTGTGGTGAAGGCAGAGGACGTGGACGTGATGATTAATGGTATTCCTTGGAGAGTTGGGATAAGAGTGAAAATGGGCAGAGAGAACTATGATTCGTCACGGATGGATTGGTTTCAGGGGACTGTTTCTGGTGTTACTGTTCCCGGTAAAGATCAACCATGGAGTGGTTCTCCTTGGCGCATGCTTCAGATTACATGGGATGAATCCGAAATCTTGAAGAATGTAAATCCTGTCAGTCCATGGCAGGTGGAACTTCTTTCTGAGACACTTTTACTTCCTCAACTATTTCCCCCAACAAAGAGGTTCAGAACTAATGAAATGGGAGAATCCTCCTCTTCCATTACAAGATTTTCTATTCCTGATTCCACAATGGGAGTGCTGAATCAAACATTGTTGAGTAATTATGATACTTTTTTTTCTGCTAGCATGCAGGGAGCCAGGCATCCTCTATTTTCTGCAGCTACTTATCCCCTCTTTCCGATTGATCCTTCTCTGTCTATTGATAGTTCCTTTGAGAATAATATTGTACCAAAGTTAAATGTTATGTTGCCAAAACTTAACATTGACACTCATAAGCCTAAAAACTTATCACCACATAGCAAGTCTAGTTTGACTCCCATTGATGAGACCCCTAACAGCAACTCAACCAAATCTGGAGCTACTTCATTTCAGTTATTTGGTTGTACTATTCAAACAGATCAAGCTTCTGATAAAATTGATGACCATAACAATCTTGAAGGAGAAGACAACATACAATAA 1671 0.4823 MPRRSAPSSSLPPRPTPIPAKFWRACAGISAXAPVVNSRVYYFPQGHIDQAASQPRNLSPLVYSRPVIPCRVAAVNYFADPNTDEVFLKILLVPVTDGSAQDFLPPAVAAEGNSGNGIGDDEEVASYAKILTRSDANNGGGFSVPRSCADLVFPPLNFEEDPPVQNLRITDLHGAVWEFRHIYRGTPRRHLFTSGWSKFVNSKKIISGDTVVFMKDSDGRMFVGLRRNMSLDDDIADGGLDWFAAMDEGEGEKEEEEKEEVMTEGFARNGKGRVTSTSVAEAMELAAQNKPFEVVYYPSVSWGEFVVKAEDVDVMINGIPWRVGIRVKMGRENYDSSRMDWFQGTVSGVTVPGKDQPWSGSPWRMLQITWDESEILKNVNPVSPWQVELLSETLLLPQLFPPTKRFRTNEMGESSSSITRFSIPDSTMGVLNQTLLSNYDTFFSASMQGARHPLFSAATYPLFPIDPSLSIDSSFENNIVPKLNVMLPKLNIDTHKPKNLSPHSKSSLTPIDETPNSNSTKSGATSFQLFGCTIQTDQASDKIDDHNNLEGEDNIQ* 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0737 556 MobiDBLite consensus disorder prediction 493 523 - -
Amo08g0737 556 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Amo08g0737 556 PANTHER AUXIN RESPONSE FACTOR 15 546 - -
Amo08g0737 556 SUPERFAMILY DNA-binding pseudobarrel domain 123 233 IPR015300 -
Amo08g0737 556 Gene3D - 124 229 IPR015300 -
Amo08g0737 556 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 15 546 IPR044835 GO:0003677|GO:0006355|GO:0009725
Amo08g0737 556 MobiDBLite consensus disorder prediction 501 523 - -
Amo08g0737 556 CDD B3_DNA 126 227 IPR003340 GO:0003677
Amo08g0737 556 Pfam Auxin response factor 282 367 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Amo08g0737 556 Gene3D - 321 394 - -
Amo08g0737 556 Pfam B3 DNA binding domain 128 228 IPR003340 GO:0003677
Amo08g0737 556 SMART B3_2 127 229 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0737 Amo-Chr8 13077398 13079423 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0737 22 553 B3 DNA Binding Superfamily AT1G77850 42.190 1.43e-130 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Amo08g0737 B3 2.6e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0737 - - aip:107607845 1045.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g0737 08 13077398 13079423 Amo17g2822 17 130130640 130132715 hybridization