Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0711 ATGGCAGCGGAGACTCAGAGATCCACGGGCACAGTGAAATGGTTCAACGCACAGAAGGGTTTCGGATTCATAGCTCCCGACGATGGCGGCGAGGATCTCTTCGTCCACCACTCTGCCATTCGATCCGACGGTTACCGTACACTCTCCGAGGGCCAGCCGGTTGAGTTTGCCGTTGATTACGGCGACGCCGGCAGAACTAAGGCCGTCGATGTCTCYTCCATGRCTAGATCTCGCCCGTTTGGTGGTGGCTTTCGAGGTGGAGGGGGAAGAGGAGGAAGAGGAAGRGGTGGTGGAAGGTTCGGTGGGCGTTATGGCGGCGGTGAAGGCCGGGGCGACGGTGACGGTTACAGTTACGGAAGAGGTGGAGGCGGTGGTCGTAGAGGAGGAGGTTATGGCGGTGGAGGAGGCCCTGAGTGTTACAATTGTGGACGAACAGGTCACTTGGCGAGAGATTGTTACCAGGGACAGGGTGGTGGAAACCGGAGACGAGGCGGCGGCGGCGGCGGAAGCGGCGGCGGTGGTGGTGGAGGTTGTTTTAACTGTGGGGAGAAAGGGCATTTTGCGAGAGAATGTCCGAACGCTGAAAATTGA 591 0.5888 MAAETQRSTGTVKWFNAQKGFGFIAPDDGGEDLFVHHSAIRSDGYRTLSEGQPVEFAVDYGDAGRTKAVDVSSMXRSRPFGGGFRGGGGRGGRGRGGGRFGGRYGGGEGRGDGDGYSYGRGGGGGRRGGGYGGGGGPECYNCGRTGHLARDCYQGQGGGNRRRGGGGGGSGGGGGGGCFNCGEKGHFARECPNAEN* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0711 196 SMART c2hcfinal6 177 193 IPR001878 GO:0003676|GO:0008270
Amo08g0711 196 SMART c2hcfinal6 138 154 IPR001878 GO:0003676|GO:0008270
Amo08g0711 196 CDD CSP_CDS 9 71 IPR002059 GO:0003676
Amo08g0711 196 SUPERFAMILY Nucleic acid-binding proteins 6 72 IPR012340 -
Amo08g0711 196 ProSitePatterns Cold-shock (CSD) domain signature. 21 40 IPR019844 -
Amo08g0711 196 ProSiteProfiles Cold-shock (CSD) domain profile. 7 73 IPR002059 GO:0003676
Amo08g0711 196 SUPERFAMILY Retrovirus zinc finger-like domains 128 194 IPR036875 GO:0003676|GO:0008270
Amo08g0711 196 Gene3D - 1 72 IPR012340 -
Amo08g0711 196 Pfam Zinc knuckle 177 193 IPR001878 GO:0003676|GO:0008270
Amo08g0711 196 Pfam Zinc knuckle 138 152 IPR001878 GO:0003676|GO:0008270
Amo08g0711 196 Gene3D - 174 196 - -
Amo08g0711 196 Gene3D - 134 164 - -
Amo08g0711 196 SMART csp_8 9 74 IPR011129 GO:0003676
Amo08g0711 196 ProSiteProfiles Zinc finger CCHC-type profile. 139 152 IPR001878 GO:0003676|GO:0008270
Amo08g0711 196 Pfam 'Cold-shock' DNA-binding domain 9 72 IPR002059 GO:0003676
Amo08g0711 196 MobiDBLite consensus disorder prediction 79 130 - -
Amo08g0711 196 MobiDBLite consensus disorder prediction 153 186 - -
Amo08g0711 196 ProSiteProfiles Zinc finger CCHC-type profile. 178 193 IPR001878 GO:0003676|GO:0008270
Amo08g0711 196 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 194 - -
Amo08g0711 196 PRINTS Cold shock protein signature 10 25 IPR002059 GO:0003676
Amo08g0711 196 PRINTS Cold shock protein signature 46 64 IPR002059 GO:0003676
Amo08g0711 196 PRINTS Cold shock protein signature 31 40 IPR002059 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0711 Amo-Chr8 12556677 12557601 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Amo08g0711 CSD 3.2e-25 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0711 - - jre:109013657 174.866
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g0711 08 12556677 12557601 Amo17g2771 17 128966814 128967719 hybridization