Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0705 ATGAAACCTTCCATAATATCTTCCTCTCTTCTAATCATCTTCCTCGTCTTCACTGCCACTGCCACCATCTCAGGCTACACCTTCAAGGCCTACATCACTCCAAATTTCAGTGCCACATACCTCCAATTCATTGATGACTCTGGAACCTTCTTAATATCTCCAAACGGAACATTCAAGGCTGCAATATTCAACCCGGGTTCCCAACAAACCAGCTTCTATCTCTGCATAATCCATGCTGCATCAAGAACCATCACTTGGTCCGCCAACCGCGGCCGCGCCATCTCGAGCTCCGGCCAGATGAATCTAACTGCTAAAGGGATAACAATTTCTGATGAAAGTGGAAGGAATAATCCTGTATGGTCAACTCCACCATTGAGATCACAAGTTGRTAGGCTTGTCCTCACTGACATGGGTAACCTCCTACTCCTTGATCCTTCCAATGTTTCTCTTTGGGAAAGTTTTCGCTATCCAACCGACACAATTATCATCGGCCAGAGCTTACCTGTTGGATCATCTTTGTCAAGTTCTTCATCAGATTCAGACTTGTCCATTGGAARCTACAACCTCACAATCACTTCCTCTGATGCAATTCTCCAATGGCTTGGACAGACATATTGGAAACTTTCAATGGACACAAAGGCGTATAAGAATTCATTAAGCATGGTGGAGTACATGGCTGTGAACAGAACAGGCTTCTACCTATTTGGAAGTAATGGAACGGTTGCTGTGTTTCTGGTAGGCTTACCGGAGTCGAATTTTCGAGTAGCTACATTGGATAACTCTGGCCATTTTGTGATCAAAAGTTTTTCTTCCGGAACCGGTTGGAAGCAGGAATTTCAAGGGCCAGATGATGGTTGTGGAACTCCCTTAGTTTGTGGCAGAGTTGGTTTATGCAATGATGATGATACCTCTTCTTCATCTTCTTCTTCTTCATCATCATCATCACCTGTTTGTTCTTGTCCCCAGAATTTTCATGTAGGTTCAGGTAATTCTGGTGGTTGTGTTCCAAGCAACGGTTCTTAYTCCTTTCCATATTCTTGTGATGTTTCTAATAATGATAGTTACCACAACAACAACAACCAATCAAATTCTGCTTCTTCCATTGTTTCATTCTTGAATCTTGGAAATGGTTTGGACTACTTTAACAATATCTACACCGATCCTGTTATGGACAGTGTGGATTTATCATTATGTCAAGACCAATGTTCCAAGAATTGTTCATGCTTGGGAGTCTTCTATAAAAACTCATCCGGTTCATGCTATGTGATTGAAAACGAGTTGGGGTCAATTTTGTCAAGTAACGATGGAGCCAATCAAGACATGTTTGGCTTCATCAAGGTYTCTATAGGATCCACAACCACCAATGATGATACGAGAGATGYTGAAGATGGCGGAGGAGGCTTTCCGGTGGTGGCCRCAGTGTTGTTGCCGATCACAGGCTTCGCTCTCTTGATGGCCTTTCTTTTCTTCTTGTGGAGAAGATCTATTAAAATTTCCAAAAGAAAACAAGATTTGGAACTCGGAAAACCCAACAATAATCCTCATTCTTCCGGGGACCTTGATGCCTTCTACATCCCGGGTTTGCCTCGAAGATTCGACTACGACGAACTCAAAAAGGCCACCGATGATTTCAAGACTCTGATCGGCTCCGGTGGTTTTGGTACGGTGTACAAAGGAGTTCTCTCCGACAATGCCGTCGTGGCGGTCAAGAAAATAGTCAACATAGGAGTTCAAGGGAAGAAAGACTTTTGCACAGAGATTGCTGTCATTGGAAACATCCATCATGTCAATCTTGTCAAATTAAAAGGCTTTTGTGTCCAAGGGAGGCATCGGTTTTTGGTGTATGAGTACATGAATCTTGGTTCCCTCGACCGAACGTTGTTCGGTGGAGGGCCACCGTTGGAGTGGCAAGAGAGATATGACGTGGCATTGGGGACGGCGCGTGGTCTTGCCTACCTTCATGGTGGGTGTGAGCATAAAATTATTCACTGCGATATCAAACCTGAAAATATTCTTTTACATAATCATTTTCAAGTTAAGATATCGGATTTTGGATTATCAAAACTTTTAAGTCCTGAACAATCTGGATTGTTCACAACAATGCGAGGTACACGTGGATACCTCGCTCCAGAATGGCTCACAAATTCCGCCATCACAGAAAAAACTGATGTGTATAGTTACGGTATGGTTCTTCTCGAACTTATAAGCGGAAGAAAAAATTGTTATTTTAAATCAAGAAATCATAGTATAGACGAGGATAGTAATTCTTCGTCATCTTCGACGTCAGGATTGCTTTATTTCCCTTTGTTGGCATTGGAAAAGCATGAAGAAGGGAACTACATGGATCTTGCTGATCCGAGATTAGAAGGGCGCGTGACGAACGAAGAGGTGGAGAAGCTTGTGCGGATTGCGTTGTGCTGTGTTCATGAAGAACCGGCGTTGAGGCCGAACATGGCGGCGGTTGTTGGGATGTTGGAAGGTGGTATGGCATTGCCGCAACCAAAGATGGAGTCTTTGAACTTTTTAAGGTTTTATGGTCGTAGGTTTACGGAGGCTTCAATGATAATTGAGGAGAATAACGATAACGAAGGAGGAAGAAGAGAAGTGAATAATAATTCTTCAAGCATGACAAGTGGTGGCTCTCAAGCTGCTTTAGTTTCTTACATATCTTCACAGACTGTCTCAGGACCAAGATAG 2697 0.4301 MKPSIISSSLLIIFLVFTATATISGYTFKAYITPNFSATYLQFIDDSGTFLISPNGTFKAAIFNPGSQQTSFYLCIIHAASRTITWSANRGRAISSSGQMNLTAKGITISDESGRNNPVWSTPPLRSQVXRLVLTDMGNLLLLDPSNVSLWESFRYPTDTIIIGQSLPVGSSLSSSSSDSDLSIGXYNLTITSSDAILQWLGQTYWKLSMDTKAYKNSLSMVEYMAVNRTGFYLFGSNGTVAVFLVGLPESNFRVATLDNSGHFVIKSFSSGTGWKQEFQGPDDGCGTPLVCGRVGLCNDDDTSSSSSSSSSSSSPVCSCPQNFHVGSGNSGGCVPSNGSYSFPYSCDVSNNDSYHNNNNQSNSASSIVSFLNLGNGLDYFNNIYTDPVMDSVDLSLCQDQCSKNCSCLGVFYKNSSGSCYVIENELGSILSSNDGANQDMFGFIKVSIGSTTTNDDTRDXEDGGGGFPVVAXVLLPITGFALLMAFLFFLWRRSIKISKRKQDLELGKPNNNPHSSGDLDAFYIPGLPRRFDYDELKKATDDFKTLIGSGGFGTVYKGVLSDNAVVAVKKIVNIGVQGKKDFCTEIAVIGNIHHVNLVKLKGFCVQGRHRFLVYEYMNLGSLDRTLFGGGPPLEWQERYDVALGTARGLAYLHGGCEHKIIHCDIKPENILLHNHFQVKISDFGLSKLLSPEQSGLFTTMRGTRGYLAPEWLTNSAITEKTDVYSYGMVLLELISGRKNCYFKSRNHSIDEDSNSSSSSTSGLLYFPLLALEKHEEGNYMDLADPRLEGRVTNEEVEKLVRIALCCVHEEPALRPNMAAVVGMLEGGMALPQPKMESLNFLRFYGRRFTEASMIIEENNDNEGGRREVNNNSSSMTSGGSQAALVSYISSQTVSGPR* 899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0705 898 ProSiteProfiles Bulb-type lectin domain profile. 35 155 IPR001480 -
Amo08g0705 898 SMART blect_4 42 157 IPR001480 -
Amo08g0705 898 SUPERFAMILY Protein kinase-like (PK-like) 520 825 IPR011009 -
Amo08g0705 898 MobiDBLite consensus disorder prediction 866 884 - -
Amo08g0705 898 SMART serkin_6 542 825 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo08g0705 898 Gene3D Transferase(Phosphotransferase) domain 1 618 836 - -
Amo08g0705 898 ProSitePatterns Serine/Threonine protein kinases active-site signature. 661 673 IPR008271 GO:0004672|GO:0006468
Amo08g0705 898 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 11 898 - -
Amo08g0705 898 Pfam D-mannose binding lectin 83 168 IPR001480 -
Amo08g0705 898 PIRSF SRK 4 882 IPR024171 GO:0004674
Amo08g0705 898 ProSitePatterns Protein kinases ATP-binding region signature. 548 571 IPR017441 GO:0005524
Amo08g0705 898 ProSiteProfiles Protein kinase domain profile. 542 836 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo08g0705 898 Gene3D - 42 155 IPR036426 -
Amo08g0705 898 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 208 IPR036426 -
Amo08g0705 898 Gene3D Phosphorylase Kinase; domain 1 521 617 - -
Amo08g0705 898 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE 11 898 - -
Amo08g0705 898 CDD B_lectin 47 157 IPR001480 -
Amo08g0705 898 MobiDBLite consensus disorder prediction 858 884 - -
Amo08g0705 898 Pfam Protein kinase domain 545 819 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo08g0705 898 CDD STKc_IRAK 548 827 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0705 Amo-Chr8 12532194 12535001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0705 525 834 Receptor kinase-like Gene Family AT5G20050 43.653 1.88e-76 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Amo08g0705 Pkinase 3.5e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0705 - - ahf:112766506 1634
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g0705 08 12532194 12535001 Amo17g2769 17 128946347 128949252 hybridization