Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0697 ATGTCTCTGAGTCCACCAAGAGAAAGAAGCAACAACAATAACAATGGATTCCAACTATACTGGTGCTTCCAGTGCAACCGCATGGTGCGAGCCGCACACGATAACAACCCATCCTGTCCACGCTGCTTTGGCCAATTCATCCAAGAAATCAACATGCCAACCCCAAGACTCTTTCTCGATTTTACCCCTAACACTAACGACCCTTCTCCACAGCCCCGTCTTCTAGAAGCTCTCTCCCTCATGCTCGATCCCGCCTTCCAACAACCCCGTCGCCGCCCCCGCATCCGCATCCGCCGCCGCCAACCTTCCGACACATCCGACCCCCACCCTACAACTCGTCCCCGAACCTGGATCATCGTCCATCCCATCGGTGCTTCCCCCGAGGAGCTCGAAGCCATGGTTCCGCCGCCGCGCCGCGACCGTCCGGTGGTGCCGATCGGGGTGGACTCCAGGGACTACTTCCTTGGTCCGGGACTGAACGAACTGATCGAGCAGATTACCGAGAATGATAGGCCGGGTCCGGCGCCGGCGGCGGAGAGAGCGATCAGAGGGATACCGAGGGTGAAGATAGAAGCACAGCATCTGAAAGAGAATTCTCAGTGTCCGGTTTGTCAGGAAGAGTTTGAGGTTGGTGAAGAAGTGAGGGAGCTTCCATGTAAGCATGTTTATCACTCTGATTGCATTGTTCCGTGGCTGAGGCTTCATAATTCTTGCCCCGTTTGCCGCCATGAGGTGCCCGATGGTGATGATGATGATGAATGTGTTGCTGAGGGGAGGTTTCAGAGGTGCTTGAGGTGGACGAGGGTTTCTTCTCTTTGGCCATTTCATCACCACCGTCGACGTGTTCATCCTGCTGATCAAGGACCAGGAGAGAATAATAACGCTACTGCTTCTCTCAGGGGTGATTAA 909 0.549 MSLSPPRERSNNNNNGFQLYWCFQCNRMVRAAHDNNPSCPRCFGQFIQEINMPTPRLFLDFTPNTNDPSPQPRLLEALSLMLDPAFQQPRRRPRIRIRRRQPSDTSDPHPTTRPRTWIIVHPIGASPEELEAMVPPPRRDRPVVPIGVDSRDYFLGPGLNELIEQITENDRPGPAPAAERAIRGIPRVKIEAQHLKENSQCPVCQEEFEVGEEVRELPCKHVYHSDCIVPWLRLHNSCPVCRHEVPDGDDDDECVAEGRFQRCLRWTRVSSLWPFHHHRRRVHPADQGPGENNNATASLRGD* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0697 302 MobiDBLite consensus disorder prediction 89 114 - -
Amo08g0697 302 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 12 251 - -
Amo08g0697 302 SMART ring_2 201 241 IPR001841 -
Amo08g0697 302 Pfam Ring finger domain 200 242 IPR001841 -
Amo08g0697 302 Pfam zinc-ribbon 18 50 IPR039525 GO:0061630
Amo08g0697 302 PANTHER - 12 251 - -
Amo08g0697 302 SUPERFAMILY RING/U-box 182 246 - -
Amo08g0697 302 MobiDBLite consensus disorder prediction 281 302 - -
Amo08g0697 302 ProSiteProfiles Zinc finger RING-type profile. 201 242 IPR001841 -
Amo08g0697 302 CDD RING-H2_RNF126_like 200 242 - -
Amo08g0697 302 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 164 248 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0697 Amo-Chr8 12431697 12433244 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0697 140 253 C3H Transcription Factor Family AT5G01980 42.241 7.21e-26 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0697 K11982 - gmx:100787399 310.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g0697 08 12431697 12433244 Amo17g2755 17 128673466 128674875 hybridization