Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0684 ATGTTAATTGAGATGGGTTCTTGTGGGGATTCAGCTATGGTTGATGATGGAATATCAGGTGGGTCTGTTATTGAGCAGCATTTGTGCTCGGAGATTCCCGTGCATTCGGATCATTTGCAGAAACAGTTGTGTTCAGAAGGAGCTTGTAGTGTGTTGTACTCTGATGAGCTTAGCAGCTTGAAGGATGGCAGTGTGGATTTACCCCAGGAGGGTTCTGCAAGCGGCGGTGCTGTTGTTGCAGATGTTGAGCTTCACAGGGCGAAGGATGGAAGTGTGGATTTACCCCAGGAGGGCCCTGAGGGTTCTCTAAGCGGCGGTGCTGTTGTTACGGATGTTGAGCTTCACAGGGCGAAGGGTAGTGTGGATTTACCCCAGGAGGGCCCTGAGTGTTCTACAAGCGGCAGTGATGTTCCGGACAAGTGTGGAGATGTCTTGCCAAATGAATGTGGAAATGCTGATATGTTGCAATTGGAGAACACCTCTGAGCATGATTGTCAGAATCATTCAAGGATATGTTGTGGGAACAACGAGGGTTCAGGTCTAAAAACTAGGGGGCTGTGTTCGGAAGGAAATTTTCAAGATGAAGGCGACACAGACATTCCATCGGAGTCCATAACTGTGACTGGGTTGCAGGAGCATTGTGTTCAACACGTTGTGCAGAAGGATGAGAAGCTCAATGTATTCCCCTCAGTGAATGATGATTCAGCTGTCATGGGAGGCAAAAATGATGACTCCAGTGTACTTGTGGATGCTTTGGATTGTGTGCATGATTTCAGACATTCTGAAATGTCCTTGGAATCAGAACCCACGACTGACTTGCTAGTTGGTTGTGACCACAAAAATGAGCAGGGGGACATTGTGAGAAATGCAGATCCATTGTCAATGGGTGTGGAAAAATGTGATGCTTTTGATGGGATGGAATCCGATGCTTGCAGGCAGGCATCTCCTTTGCAGATGCAGGCTTTGGAAGTTCCAACAACTGTATGTACAGAGGAAGATAGCAGACGTGGTCAGCTATGTGATGTTAAATATGGTGATGATTGGAATAGTAGTATTGATGAAAAGATTAAAGCTTTTGTAGATAAGGAAAACATTGTTGATTCACATGTCCAAGTATTGTCCTCACCAGGCTGTCATAGGACCTTGGAGAGTTCACCTGTAGTTGATTCCCCTCCGGAGACTTCAGCGTTGGTCCAGGGTAATGTAATGAAGAATGATATCTTGCAAATAGATGAGAAGTTGTGTAAATTGAAGGACTCTCACTCAGAAGAAACTACCAACTATGCTCCTAGGAAACCTTTATATGCTGATTCAGATCAGCCCTCCATTGTTTTAGTCACCGATACCTCTTTGAAGGACACACATGATCTGCTTCCTAAGGGTGGTGTTGTTTCTGTCAATAACAGTAGTGCTATGGACACTGTTGGACAGACAGATAATGATGGAAAAGATACTGTGGAAGCTGATTTTTTTGCTCAAAGCATCCTATTGCCGTCTCAGAGGAATAGTAGAAGAAATAAAGTTGGTCGTAAGACACAAACAAAAAAAGCCTCAAGAAAATGCAACAAAGCTGATTTGACACATCCAGGAGGAGATATGAAGATAAACTTAGAGGTTGCTAGAAAGAAAAGAAGTTCTTTCTCCAAGCCGGCACGATCTTCTATCTGGGGATTGCTTGGGAGCATTGAACAATATTTTGAGCAAGATAATGAGCTTGGGATTAGTAAAGCCATGTGCCAAGAATTGGGGAATACTAGAAGCAAGCGTCAAGCAGGAAAAGCATTTAAGAACAGTGCAAGTTCTAGTTCTTCAAATGCAGGGCAGAAATGTCCAGTTCCAACAACTCGGGTCCGTCTAAAGATCAAGTTCGGGAAAGAAATTGATCTAAGTAGTTCAAATATTTTGATTCCAGAAATTGGCAATGCCTTTAATCCTGCTTCTGACATGGGGACTGGTTCAGGTTCTCAGAAAGTTGGAAGCAATGCGGAAGACAAATCTTTGGGACCGGTGTCCTTGGGCAATTTAGAAACCTTCAAAAGCAACCTCAAGAAGGATGATCTTGTACTAAATGCGCAAATTGCAACAAACCACTTAGAAAGTACTGCAAAAATTGAGAAGTCAAATGGGGATGTAGAGGCAAAGTTTCTTACAAATCCTCTAGAAAAGGTGGTAGAACCATTGATTGAACCAATCATTAATATGGATCCTGGAACTTCACCTGATTCAGAAGTCATCAATTCAGTTCCAGAAGTTCAAGTTGGAGAAAGACATCAAGAAGATATGCATCATGCTCTTTTAGGTCCTCCTTTGGATTTCAATTCTAATTTGCATATTACTATTAGCAAGAAGGGGAAGAAAAAAGACAAACATATTTCTTCAAGTGATTGTATTACTGAAGTTGGATCACATGGGCGACATAGAAGTAATAAAGCAAAACAATCAAAGAATCACAGATGTAAGAAGAATTCTAGTAATACAGTTAGCTTTTTAGAATTGCCTGCTTCCACTGAGATAAATGCTTCAAGCAAATCTATCAGTAGTGAAGAATTTCCGACAGAACCATTACCCCTTTCTGGTGAGAGTGAACTTGGAGACTCTGCTGAAGCTTTGAAGGTCCAAGGGTGCAAGCCATCTGTTAACCACAGGCCATCAGAACCCCAGGGTTCTGAGAATTTGCCGCCTTGTGTAAGATATTTGGGGCGTAAACTACCTAAAAGCCTTATGAGTGTTAAATTTAGCAAGGCCAAGTCTAAAGCTTCTGACTCAACAAAGAAAAAGATCACTTGTAGACACAAGGAGAAACAGAGAAGGCCAAATAGTAAAAGCGAAGTCAAGGGAAAAGGTGGCCCGCATAAAGTTATGGCAGAAGTGGAGGATCACATACATACAGCAACCAGCACAGTTGGAAATGGCAAATTGGATGCTGATCAAAGATTTAATGCTGATGGAAACAGAGTATCAGTTAATGTATCTAATTTGAACATATTGCCCACCATTGATTCGGGAGAGCAGCATAAATCACCACATAATGCATGGGTGCGTTGTGATGATTGTCACAAGTGGCGGCGCATTCCAGCTGTGCTTGCTGACCTGATTGATGAGACAAACTGCACCTGGACATGCAAGGATAGCAAGGATAAAGACTTTGCTGATTGTGCTATCCCTCAGGAAAAGTCAAATGCAGAGATTAATGCAGAATTGGGATTATCGGATGAAGAAGATGCTTACGAAGACTCCAGAAATTATAAGGAATTGGAATTCCAACAGCCATTGGTTTCCCAGGAGTCGACTTTCACCCAAGTCCTTTCCAATGAGTTTCTACATCGTAGCCGTAAAACACAAACTATTGATGAGATAATGGTCTGCCATTGCAAACAACCTCAAGTAGGCAAGTTAGGCTGTGGGGATGAATGCCTAAACCGGATGCTAAACATTGAATGCGTTCAAGGAACCTGCCCATGTGGGGATTATTGTTCCAACCAGCAGTTCCAAAAACGCAAGTATGCCAGCTTGAAGTGGTTTAAATGTGGGAAAAAAGGTTATGGACTGAAGGCACTTGAGAATATAGCCCAAGGCCAGTTTCTCATTGAATATGTTGGGGAGGTGCTTGATACTCATGCTTATGAGGCACGGCAAAGAGAGTATGCTTTGAAGGGTCATAGACATTTCTATTTTATGACCTTGAATGGAAGTGAGGTGATAGATGCAAGTGCAAAAGGAAACTTGGGCCGTTTCATTAATCATAGTTGTGATCCTAATTGTCGAACAGAAAAGTGGATGGTGAATGGGGAAATATGTATTGGACTGTTCGCATTGAGGGATATTAAGCAGGATGAAGAAGTGACATTTGATTACAACTATGTAAGGGTTTTCGGTGCTGCTGCCAAAAAATGCTATTGTGGCTCAATTAATTGTCGAGGTTATATAGGTGGTGGTGATCCGTTAAATTCCGATTTGATAGTTCAAGGTGATTCTGATGAAGAATTTCCAGAACCTGTTATGCTTAATGATGATGGCGTAATTGAAAACGGGTTGCTTTCACGCAAGTTTACTATTGCGATAGACACAGATAATACTCCAGAGAAGGAGAGTTCTATGAACCCTTCCTCTGCTGTTGATTTGTTGCACAGCTCCATTGAAGAAAATTCAAAGGCCAAGGTACCATCTTCTGTTCGCGTTGAAGAAATTTCTCAACTAGTGGAGAATAGAGAAAGTAAAACCATGCCTGCTATGCAACAAGGGCATGCAATCGATCTTACGGACAAAACTACCTCCATTCAGAAAGATGAGAAACTTTCTTCCCTTGCACCTGTCAGAAAAGTCTTATTGAATGCTACCATCAGTAATAAGGAATTTAAGCCTGAAATAGTCAAGGCTCCTAAACTGGTTAGTTCTGTTAAAAGGGGAAAAGTTTGTGCTAATCCTCCAAACGGCCTCAAAATTGAGACAACAGTGAACCGATTGCAGTTGTCATCTGGGAAACTGAAAAAAGTTGTTGAAGGTTCTTCTAATGCAAGATTTGAAGCAGTCCAGGAGAAGCTTACGGAATTACTCGATGGAGATGGAGGAATAAGCAAAAGAAAAGATGCCACCAAAGGTTACTTGAAACTCTTGCTTCTCACTGTGGCATCAGGTGATAGGAGCAGCGGTGAAGCTATTCAAAGCAATCGAGATCTCTCGATGATCCTTGATGCCCTTCTAAAAACGAAATCTAGAGCAGTGCTAAATGATATAATTAACAAAAATGGTTTACAGATGTTACATAAAATCATGAAGCAGTACAGGCGGGATTTCAAAAAAATTCCAATATTACGAAAGCTGCTTAAGGTGCTAGAGTATCTGGCTGTGGGCAAGATACTGACATTTGAACATATCAATGGTGGTCCCCCATGTCATGGAATGGAGAGCTTTAGGGAATCAATGCTGTCTCTGACAGAGCATGATGACAAACAGGTACATCAAATTGCTCGAAGCTTCCGAGACAGATGGATTCCTAGGGCATCCAGAAAACATGGATATATGGACAGGGATGATAATAGAATGGAATCTCATAGAAGTTACAACAGTAACAGATTTTCATCATCACACAATCATAGGCATGAACAGGACTCTAGACCTACAGAAGCAGTGGATTGTGTTCCGATGTCAACATCCGTGGAAACTTCAGCTGATGCTGGTGCACCTGAGGGATCCTCCGCGCCCTCTCTAGATGGGGTTGATGTCAAAGGGACAAAAAAACGAAAGCGCAAAAGCCGGTGGGATCAACCAGCAGAGACAAATTCTTATTCCGATGCAGCAGTTATTGGTTCTACTGATGGAAGCCAGAACATTCATGAGGATGTTCCACCAGGATTTTCTTGTCCCGTAGGTGCTGGTGATCTTGCTCCGCGAAATGGAGTCCATTCTGGAAGTGCCCCTGACTTGGTTTTTGGTCAGCCAAAGGAGAAATTTAACTCTCGCTTGCCTGTCTCGTATGGAATCCCTTGCTCTGTTGTCAAGCAGTTCGGAACACCTCATGCTGAGATCTCGGGTAGTTGGGTCACTGCACCTGGAATGCCTTTCAACCCATTTCCTCCATTACCACCATATCCACGGGATCAAAGAGACTGTTTACCTTCCAATACTTCCAGCGCTATGGCAATTGACCAGCCTTCTGAAATCAAACAGTCAGATGGTAGTGGCCTAGTTAACAGTTGCGCAGACGATACTGTTCGCAGCACAACTGGCACTAACTCTGATGACATGAATCATACAGATGAGGAGAATCGAAACATAACTAAGCGATTGAAGGACGATGACCTGGGAAGGAGGTACTTTAGACAGCAGAAGTGGAACAATTCGAAAATACATCGACCTTGGTTCCGGAGGGATGCATGGAAATGCAATAATAGGAACAACACCAGTGGTGGTGATATGTGCGGTATGGGTGTAGGAAATGTACAATCTGAAGTTACAAGAAGCTCAGAGGATGCAATTTGTAGAGATGAGAAAGGTGGCAATAATATTTGTTAG 6012 0.4261 MLIEMGSCGDSAMVDDGISGGSVIEQHLCSEIPVHSDHLQKQLCSEGACSVLYSDELSSLKDGSVDLPQEGSASGGAVVADVELHRAKDGSVDLPQEGPEGSLSGGAVVTDVELHRAKGSVDLPQEGPECSTSGSDVPDKCGDVLPNECGNADMLQLENTSEHDCQNHSRICCGNNEGSGLKTRGLCSEGNFQDEGDTDIPSESITVTGLQEHCVQHVVQKDEKLNVFPSVNDDSAVMGGKNDDSSVLVDALDCVHDFRHSEMSLESEPTTDLLVGCDHKNEQGDIVRNADPLSMGVEKCDAFDGMESDACRQASPLQMQALEVPTTVCTEEDSRRGQLCDVKYGDDWNSSIDEKIKAFVDKENIVDSHVQVLSSPGCHRTLESSPVVDSPPETSALVQGNVMKNDILQIDEKLCKLKDSHSEETTNYAPRKPLYADSDQPSIVLVTDTSLKDTHDLLPKGGVVSVNNSSAMDTVGQTDNDGKDTVEADFFAQSILLPSQRNSRRNKVGRKTQTKKASRKCNKADLTHPGGDMKINLEVARKKRSSFSKPARSSIWGLLGSIEQYFEQDNELGISKAMCQELGNTRSKRQAGKAFKNSASSSSSNAGQKCPVPTTRVRLKIKFGKEIDLSSSNILIPEIGNAFNPASDMGTGSGSQKVGSNAEDKSLGPVSLGNLETFKSNLKKDDLVLNAQIATNHLESTAKIEKSNGDVEAKFLTNPLEKVVEPLIEPIINMDPGTSPDSEVINSVPEVQVGERHQEDMHHALLGPPLDFNSNLHITISKKGKKKDKHISSSDCITEVGSHGRHRSNKAKQSKNHRCKKNSSNTVSFLELPASTEINASSKSISSEEFPTEPLPLSGESELGDSAEALKVQGCKPSVNHRPSEPQGSENLPPCVRYLGRKLPKSLMSVKFSKAKSKASDSTKKKITCRHKEKQRRPNSKSEVKGKGGPHKVMAEVEDHIHTATSTVGNGKLDADQRFNADGNRVSVNVSNLNILPTIDSGEQHKSPHNAWVRCDDCHKWRRIPAVLADLIDETNCTWTCKDSKDKDFADCAIPQEKSNAEINAELGLSDEEDAYEDSRNYKELEFQQPLVSQESTFTQVLSNEFLHRSRKTQTIDEIMVCHCKQPQVGKLGCGDECLNRMLNIECVQGTCPCGDYCSNQQFQKRKYASLKWFKCGKKGYGLKALENIAQGQFLIEYVGEVLDTHAYEARQREYALKGHRHFYFMTLNGSEVIDASAKGNLGRFINHSCDPNCRTEKWMVNGEICIGLFALRDIKQDEEVTFDYNYVRVFGAAAKKCYCGSINCRGYIGGGDPLNSDLIVQGDSDEEFPEPVMLNDDGVIENGLLSRKFTIAIDTDNTPEKESSMNPSSAVDLLHSSIEENSKAKVPSSVRVEEISQLVENRESKTMPAMQQGHAIDLTDKTTSIQKDEKLSSLAPVRKVLLNATISNKEFKPEIVKAPKLVSSVKRGKVCANPPNGLKIETTVNRLQLSSGKLKKVVEGSSNARFEAVQEKLTELLDGDGGISKRKDATKGYLKLLLLTVASGDRSSGEAIQSNRDLSMILDALLKTKSRAVLNDIINKNGLQMLHKIMKQYRRDFKKIPILRKLLKVLEYLAVGKILTFEHINGGPPCHGMESFRESMLSLTEHDDKQVHQIARSFRDRWIPRASRKHGYMDRDDNRMESHRSYNSNRFSSSHNHRHEQDSRPTEAVDCVPMSTSVETSADAGAPEGSSAPSLDGVDVKGTKKRKRKSRWDQPAETNSYSDAAVIGSTDGSQNIHEDVPPGFSCPVGAGDLAPRNGVHSGSAPDLVFGQPKEKFNSRLPVSYGIPCSVVKQFGTPHAEISGSWVTAPGMPFNPFPPLPPYPRDQRDCLPSNTSSAMAIDQPSEIKQSDGSGLVNSCADDTVRSTTGTNSDDMNHTDEENRNITKRLKDDDLGRRYFRQQKWNNSKIHRPWFRRDAWKCNNRNNTSGGDMCGMGVGNVQSEVTRSSEDAICRDEKGGNNIC* 2004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0684 2003 MobiDBLite consensus disorder prediction 840 861 - -
Amo08g0684 2003 SMART set_7 1169 1292 IPR001214 GO:0005515
Amo08g0684 2003 Gene3D - 1002 1063 - -
Amo08g0684 2003 MobiDBLite consensus disorder prediction 1886 1922 - -
Amo08g0684 2003 MobiDBLite consensus disorder prediction 1673 1779 - -
Amo08g0684 2003 MobiDBLite consensus disorder prediction 588 611 - -
Amo08g0684 2003 MobiDBLite consensus disorder prediction 502 529 - -
Amo08g0684 2003 Pfam SET domain 1180 1286 IPR001214 GO:0005515
Amo08g0684 2003 Pfam AWS domain 1132 1166 IPR006560 GO:0005634|GO:0018024
Amo08g0684 2003 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-36 SPECIFIC 499 1929 - -
Amo08g0684 2003 MobiDBLite consensus disorder prediction 1886 1913 - -
Amo08g0684 2003 ProSiteProfiles Zinc finger CW-type profile. 1006 1060 IPR011124 GO:0008270
Amo08g0684 2003 ProSiteProfiles AWS domain profile. 1117 1167 IPR006560 GO:0005634|GO:0018024
Amo08g0684 2003 PANTHER SET DOMAIN PROTEINS 499 1929 - -
Amo08g0684 2003 SMART PostSET_3 1294 1310 IPR003616 -
Amo08g0684 2003 MobiDBLite consensus disorder prediction 788 806 - -
Amo08g0684 2003 CDD SET_SETD2 1168 1310 IPR044437 GO:0010452|GO:0046975
Amo08g0684 2003 MobiDBLite consensus disorder prediction 1756 1777 - -
Amo08g0684 2003 Gene3D SET domain 1064 1317 IPR046341 -
Amo08g0684 2003 SMART shorttest3 1117 1168 IPR006560 GO:0005634|GO:0018024
Amo08g0684 2003 SUPERFAMILY SET domain 1108 1307 IPR046341 -
Amo08g0684 2003 ProSiteProfiles SET domain profile. 1169 1286 IPR001214 GO:0005515
Amo08g0684 2003 ProSiteProfiles Post-SET domain profile. 1294 1310 IPR003616 -
Amo08g0684 2003 MobiDBLite consensus disorder prediction 936 950 - -
Amo08g0684 2003 Pfam CW-type Zinc Finger 1012 1058 IPR011124 GO:0008270
Amo08g0684 2003 MobiDBLite consensus disorder prediction 911 950 - -
Amo08g0684 2003 MobiDBLite consensus disorder prediction 781 824 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0684 Amo-Chr8 12095923 12115867 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0684 1152 1309 C2H2 Transcription Factor Family AT2G23740 33.702 1.30e-20 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Amo08g0684 SET 6.2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0684 - - adu:107460691 3950.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g0684 08 12095923 12115867 Amo17g2670 17 126952639 126967878 hybridization