Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0682 ATGGGGAGGGGTAAGATTGAGATCAAGAGGATTGAGAACTCAAGCAACAGGCAAGTCACATATTCAAAGAGGAAGAATGGGATCCTTAAGAAGGCTAAAGAAATCAGTGTTCTTTGTGATGCTCAAGTTTCTCTTATCATCTTTGATACCAAAGAGCTTCTGGAAAAACTCTCTGGGATGCTAAACATGAGGCACTTGAAGGGAGAAGACATTACCTCACTGAATTACAAAGAGCTTATGGCCCTAGAAAATGACCTTGATAAGGGCCTCAATGGAATCCGTGAAAAAAAGATGGAAGTGCACAGGATGTTCAAGAGAAATGGCAAGATTTTGGAGGAAGAAAACAAGGAACTCAATTTCCTTCTTCAACAGCATATGGCACTGGAAGGAGCGAGAAACATGCATGGACAATGGATTTAA 420 0.4095 MGRGKIEIKRIENSSNRQVTYSKRKNGILKKAKEISVLCDAQVSLIIFDTKELLEKLSGMLNMRHLKGEDITSLNYKELMALENDLDKGLNGIREKKMEVHRMFKRNGKILEEENKELNFLLQQHMALEGARNMHGQWI* 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0682 139 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Amo08g0682 139 SUPERFAMILY SRF-like 1 53 IPR036879 GO:0003677|GO:0046983
Amo08g0682 139 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 50 - -
Amo08g0682 139 Gene3D - 13 132 IPR036879 GO:0003677|GO:0046983
Amo08g0682 139 Coils Coil 111 131 - -
Amo08g0682 139 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Amo08g0682 139 Pfam K-box region 62 119 IPR002487 GO:0003700|GO:0005634|GO:0006355
Amo08g0682 139 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Amo08g0682 139 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 50 - -
Amo08g0682 139 PANTHER SERUM RESPONSE FACTOR HOMOLOG 60 135 - -
Amo08g0682 139 ProSiteProfiles K-box domain profile. 40 128 IPR002487 GO:0003700|GO:0005634|GO:0006355
Amo08g0682 139 PANTHER MADS-BOX TRANSCRIPTION FACTOR 60 135 - -
Amo08g0682 139 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Amo08g0682 139 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Amo08g0682 139 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Amo08g0682 139 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0682 Amo-Chr8 12052007 12054755 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0682 1 101 MADS-box Gene Family AT5G20240 44.056 1.87e-31 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Amo08g0682 K-box 7.6e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0682 K09264 - gmx:100795861 206.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g0682 08 12052007 12054755 Amo17g2727 17 128068683 128069563 hybridization