Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0673 ATGGGTGTGGCCGTAACAGCCCACCTCCTCTTGGAACTAAGTACCTCAAATAAGACAGTGAATCTGGAAAAATGTGATCCTCCGATTGTGATCCAAGTTGACACCACCGACACGTTACCTTTATCAAGCGCCACAGGAGACGTTACCTTTATCAAGCGCCACAAGAGAGAGCAAAGTGAGAGTCTTTCCGAGCCCCGTTTCATCAGCCAAGATCCGCCACAGGAGACGTTACCTTTATCAAGCGCCACAAGAGAGAGCAAAGTGAGTGTCTTTCAGCCCCGTTTCATCAGCCAAGATCCCTCTCTTCCAAGAGATTCAAAAACTTCCCTGCTTTCTCCGCCCAGAGAGGAAAGCGAGGAGCTTCCGCCGTTTTGGGTGGAAAGCAGGGGAGAGTTTTTGAACCTTTTAACAAAAAAGAAGGGATCTTGGCTGATGAAACAGGGCTCGGAAAGACTCTCACTTTGCTCTCTCTTTGTGGCGCTTGATAAAGCTACACTGGTTTTGGAGAACAAAGGGGCCGAGCAGCCGGTTGAGGGCATAAAACTTTCAGGAGCCGGGCGAAGGCAAATGGTGATGCACCACAATTCCAAGAGGAGGTGGACTGTCACGGCCATATCCATCGAGGATGGCTACGTGGACGCATTTGCATTCATGAGTTTCCTGGATTTTGAACCATTCTCCAATAGAGAAAGTTGGAACTGGTTCATTCAGCGCCCTATAAATCAAGGCCTCGACAGCTGCCACAAGCGACTCGAGGTATTGATGAAGGCAATTTTGTTAAGAAGAACAAAAGACAATGAAATGTTAGGGGTGCTACCAAAAATATTGAGACTCTATATGTTGAACTTAATGAAGAAGAACTACCATTTTGCATCTTTGCCAAGTCTGTGTGATGTAGCATTGTGCCCCAGTGATCTCGCAAACACATTCCGATTAACTCTTGAAGATGTTTCCAATAACCCACGGTTGTTGCGAAGGTTAGTTGAAACGCTGCAAGAATGTGAAGCTTATGAGTGCCCAATTTGCTCTTCTCCTTCAGCAAACATCGTTATCACCTGCTGTAGTCACATCTTCTGCCGAGTCTGTATTCTGAGAATTATACAATCCAGCGGATCCCCTCATTGTCCTCTTTGCCGTAGAGCTCTATCTGAATCTGACTTGTTCTCAGCCCCAATCGAGCCTTCTAGAGCTGATAGTACCTCTACATCCTCATCATCGGATAAAGAGTTATCTTCCAAAACATCTGCGTTGATAAAATTTCTCAAAGAATCAAGAGAACAGAAGCCAACAGCAAAATCGGTTGTGTTTTCACAATTTCGCAAGGTGTTAGTGTTATTGAAAGTGACGTTGAAGGAGGCTGGTTTCAAGACTTTGCGCATTGATGGCTTGATGACGGCTGAACAGAGGGCTGGTGTTATTGATCAATTTCAAGACACTAAAGAAAATGGACCGACTGTTCTGCTTGCAGGCCTTAGGGTTTCAGGTGCAGATGTAAATCTCACAGCCGCCACCACGGTGTATTTCATGGAGCCATGGTGGAATGCGGCTGTCAAGGAACAGGCAATGGATCGCGTCCATTGCATCGGAAAGAAAGAGGCTGTGAGGATTGTTAGATTGGTTGTTTGGGACAGCATTGAGGAAAAGATGCTGATGTTGCAGGAGGAGAAGAGGGGAAATCTATTGAGAAAAAGAAAATGCTATGACTTGCCATTTATGATATATGAGAATTGCTTTTGA 1737 0.4554 MGVAVTAHLLLELSTSNKTVNLEKCDPPIVIQVDTTDTLPLSSATGDVTFIKRHKREQSESLSEPRFISQDPPQETLPLSSATRESKVSVFQPRFISQDPSLPRDSKTSLLSPPREESEELPPFWVESRGEFLNLLTKKKGSWLMKQGSERLSLCSLFVALDKATLVLENKGAEQPVEGIKLSGAGRRQMVMHHNSKRRWTVTAISIEDGYVDAFAFMSFLDFEPFSNRESWNWFIQRPINQGLDSCHKRLEVLMKAILLRRTKDNEMLGVLPKILRLYMLNLMKKNYHFASLPSLCDVALCPSDLANTFRLTLEDVSNNPRLLRRLVETLQECEAYECPICSSPSANIVITCCSHIFCRVCILRIIQSSGSPHCPLCRRALSESDLFSAPIEPSRADSTSTSSSSDKELSSKTSALIKFLKESREQKPTAKSVVFSQFRKVLVLLKVTLKEAGFKTLRIDGLMTAEQRAGVIDQFQDTKENGPTVLLAGLRVSGADVNLTAATTVYFMEPWWNAAVKEQAMDRVHCIGKKEAVRIVRLVVWDSIEEKMLMLQEEKRGNLLRKRKCYDLPFMIYENCF* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0673 578 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 321 558 - -
Amo08g0673 578 CDD SF2_C_SNF 413 540 - -
Amo08g0673 578 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR 185 270 - -
Amo08g0673 578 Gene3D - 389 567 IPR027417 -
Amo08g0673 578 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR 321 558 - -
Amo08g0673 578 ProSiteProfiles Zinc finger RING-type profile. 339 379 IPR001841 -
Amo08g0673 578 MobiDBLite consensus disorder prediction 63 84 - -
Amo08g0673 578 Pfam SNF2-related domain 184 290 IPR000330 GO:0005524|GO:0140658
Amo08g0673 578 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 185 270 - -
Amo08g0673 578 SMART helicmild6 444 529 IPR001650 -
Amo08g0673 578 Gene3D - 177 263 IPR038718 -
Amo08g0673 578 Pfam Helicase conserved C-terminal domain 413 527 IPR001650 -
Amo08g0673 578 Pfam Zinc finger, C3HC4 type (RING finger) 337 383 - -
Amo08g0673 578 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 416 577 IPR001650 -
Amo08g0673 578 MobiDBLite consensus disorder prediction 55 84 - -
Amo08g0673 578 SUPERFAMILY RING/U-box 323 385 - -
Amo08g0673 578 MobiDBLite consensus disorder prediction 97 117 - -
Amo08g0673 578 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 244 558 IPR027417 -
Amo08g0673 578 SMART ring_2 339 378 IPR001841 -
Amo08g0673 578 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 324 388 IPR013083 -
Amo08g0673 578 ProSitePatterns Zinc finger RING-type signature. 354 363 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0673 Amo-Chr8 11945833 11949779 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0673 145 557 RAD5 or RAD16-like Gene Family AT5G05130 41.290 9.17e-107 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Amo08g0673 Helicase_C 3.4e-10 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0673 K15711 - aip:107622939 390.578