Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0672 ATGCAGGGGGAGTTTTTGAACCTCTTAAAAAAAAGAGTAGGTTGCAAAATGCTAGAACCTTGGAAGGGAGGGATCTTTGCTGATGAAACGGAGCTCGGAAAGACTCTCACTTTGCTCTCTCTTGTGACGCTTGATAAAGGTAACGGTCCAACCCTGGTTGTGTGTCCAATGTCGGTGGTGTCGATTTGGATTTCACAATTGGAGGATCACATTTTTTCAGATTCACCGTCTTATTTGAGGTACTATGGTAACAAAAGGACAAAGGCTGCTGAGGAGTTGATGGCTAACGATTTGGTGCTCACTACTTACACTACACTGGCTTTGGAGAATAAAAGGGCCGAGTAG 345 0.4435 MQGEFLNLLKKRVGCKMLEPWKGGIFADETELGKTLTLLSLVTLDKGNGPTLVVCPMSVVSIWISQLEDHIFSDSPSYLRYYGNKRTKAAEELMANDLVLTTYTTLALENKRAE* 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0672 114 Gene3D - 6 114 IPR038718 -
Amo08g0672 114 Pfam SNF2-related domain 18 108 IPR000330 GO:0005524|GO:0140658
Amo08g0672 114 PANTHER TRANSCRIPTION TERMINATION FACTOR 2 19 111 - -
Amo08g0672 114 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 19 111 - -
Amo08g0672 114 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 109 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0672 Amo-Chr8 11935058 11935402 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0672 3 109 RAD5 or RAD16-like Gene Family AT5G05130 35.849 1.13e-21 86.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Amo08g0672 SNF2_N 8.7e-19 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0672 K15711 - thj:104827449 91.6633