Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0671 ATGGTGATGCACCTTAATTCCAAAAGGAGGTGGGCTGTCACCACCACACCCACCAAAGATAGCTACGTGGACGCATTTGCATTCATGAGTTTCCTGGATTTTGAACCATTCTCCAATAGAGAAAGTTGGAACCAGTTCATTCAGCGCTCCATAAATCAAGGCCTCGACAGCGGCCACCAGTGCCTAGAGGCAATTTTGTTAAGAAGAACAAAAGACAATGAATTGTTAGGGGTGCCACCAACAACTATTGAGATTCTGTATGTTGAACTTAATGAAGAAGAACGTAAAGTATATAATTGGATAAAAGGTGAAGTGATGCATTTAATGAGGAAGGATACCAAAAGAGTTAAGTTTCCTGCTGTACTAAGTACCATTTTGCATCTTTGCCAAGTCTGTGCTGATGTAGCATTGTGCCCCAGTGATCTCGCAAACACATTCCGTTTAACTCTTGAAGATGTTTCCAATAACCCACTGTTGTTGCGAAGATTACTTGAAACGCTGCAAGAATGTGAAGCTTATGAGTGCCCAATTTGCTCTTCTCCTTCAGCAAACATCGTTATCACCCGCTGTAGTCACATCTTCTGCCGAGTCTGTATTCTGAGAATTATACAATCCAGCGGATCCCCCCGTTGTCCTCTTTGCCGTAGAGCTCTATCTGAATCTGACTTGTTCTCAGCCCCAATCGAGCCTTCTAGAGCTGATAGTACCTCTTCATCCTCATCATCGGATGAAGAGTTATCTTCCAAAACATCTGCGTTGATAAAATTTCTCAAAGAATCAAGAGAACAGAAGCCAACAGCAAAATCGATTGTGTTTTCACAATATCGCAAGGTGTTACTTTTATTGGAAGTGCCTTTGAAGGAGGCTGGTTTCAAGACTTGA 882 0.4229 MVMHLNSKRRWAVTTTPTKDSYVDAFAFMSFLDFEPFSNRESWNQFIQRSINQGLDSGHQCLEAILLRRTKDNELLGVPPTTIEILYVELNEEERKVYNWIKGEVMHLMRKDTKRVKFPAVLSTILHLCQVCADVALCPSDLANTFRLTLEDVSNNPLLLRRLLETLQECEAYECPICSSPSANIVITRCSHIFCRVCILRIIQSSGSPRCPLCRRALSESDLFSAPIEPSRADSTSSSSSSDEELSSKTSALIKFLKESREQKPTAKSIVFSQYRKVLLLLEVPLKEAGFKT* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0671 293 Gene3D - 1 70 IPR038718 -
Amo08g0671 293 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 2 292 - -
Amo08g0671 293 ProSitePatterns Zinc finger RING-type signature. 190 199 IPR017907 -
Amo08g0671 293 Gene3D - 79 293 IPR027417 -
Amo08g0671 293 Pfam SNF2-related domain 1 135 IPR000330 GO:0005524|GO:0140658
Amo08g0671 293 SMART ring_2 175 214 IPR001841 -
Amo08g0671 293 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR 2 292 - -
Amo08g0671 293 SUPERFAMILY RING/U-box 168 224 - -
Amo08g0671 293 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 161 228 IPR013083 -
Amo08g0671 293 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 70 292 IPR027417 -
Amo08g0671 293 Pfam Zinc finger, C3HC4 type (RING finger) 172 219 - -
Amo08g0671 293 ProSiteProfiles Zinc finger RING-type profile. 175 215 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0671 Amo-Chr8 11933043 11934976 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0671 1 291 RAD5 or RAD16-like Gene Family AT5G05130 46.333 1.54e-84 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Amo08g0671 SNF2_N 5.6e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0671 K15711 - aip:107622939 556.984