Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0656 ATGTCGAACCGTCGTTCATCGTTTTCTTCCTCAACGACGTCGTCTTTGGCAAAACGCCATGCATCGGCGTCGTCAACCGAAAACCACAACGCGGGAAAGGTTTCCCTTGCGAAGAAGCGAGCGCCGCTAACAAACCTCACCAATAACATTTCTCGACGCTCTTCTCTGGTACCTTGTGCTACTAAAGTTGCTAAGACGAAGAAAGAGGCTTCATCATGTAACACTACTACAACTTGTTCTTCAATTTCAAGCAACAAGATACCGATTTTGCAGAGTGCTGTAAAGTGCAATGCTGTTGTTTTTCCGAAGCCTAGTTATGTCTCTGCAAGGGAAGAAGGTGATGCTAAGAAAGTTGTTGTTGCTGTTGCTGCTGCTGCCCCTGTTAGTGTTCATATCTCAAAAATGGATATTTCTCCTTGTAAATCAGATGGGGCATCTGTTTCCATGTCTTTGGATGAGACCATGTCTTCTTGTGAATCTTTCAAGAGCCCTGACATTGAGTATTTGGACAACAATGATATCGCGCCGGCCGTTGACTCAATTCAGAGGAAGACATTCAGCACCCTCAACATTTCTGATACTCCAGAGCCACCAGCAGGGAACATATGCAGTAGAGACATACTTGTTGAGTTGGAGAAAGATGACAAAGTTGTGAATGTTGATAACAACTTCATGGATCCCCAGCTTTGTGCAACATTTGCTTGTGATATATACAAGCACCTGCGTGCATCTGAGGCAAAGAAAAGACCTTCCACGGACTTCATGGAGACTGTTCAGAAGGACATAAATCCAAGCATGCGTGCTATATTGATTGATTGGCTTGTTGAGGTAGCCGAAGAGTATCGATTGGTACCTGATACATTGTATTTGACAGTGAACTACATAGATAGGTATCTTTCAGGGAATCCAATGAACAGGCAAAAATTACAATTACTTGGTGTTGCTTCCATGATGGTTGCCTCTAAATATGAGGAGATTTGTGCACCCCAGGTAGAGGAATTTTGTTACATCACCGACAACACATACTTCAAAGAAGAGGTTTTGCAAATGGAATCTGCTGTCTTGAATTATCTGAAGTTTGAAATGACAGCTCCAACAATTAAGTGTTTCTTAAGACGGTTCGTTCGTGCAGCTCAAGGAGTCAGTGAGACCCCTTCGTTGCAACTAGAGTGCTTGACAAACTACATTGCCGAATTGTCTTTGTTGGAGTACAGTATGCTTTGTTATGCTCCGTCACTAATAGCTGCTTCTGCAATTTTTCTAGCCAAGTTTATACTCTCCCCCTCAACCAAACCATGGAATGCTACATTGAAGCACTATACACAATACCAGCCTTCTGATTTGTGTAGTTGTGTAAGGGATCTCCATCGACTTTGTTGCAACAATCCTAACTCCAATTTGCCTGCAATTAGGGAAAAGTATAGTCAGCACAAGTACAAAAATGTGGCCAAGAAGTGTTGCCCTTCCTCAATACCTTCAGAATATTTTCAGAATTGA 1497 0.4255 MSNRRSSFSSSTTSSLAKRHASASSTENHNAGKVSLAKKRAPLTNLTNNISRRSSLVPCATKVAKTKKEASSCNTTTTCSSISSNKIPILQSAVKCNAVVFPKPSYVSAREEGDAKKVVVAVAAAAPVSVHISKMDISPCKSDGASVSMSLDETMSSCESFKSPDIEYLDNNDIAPAVDSIQRKTFSTLNISDTPEPPAGNICSRDILVELEKDDKVVNVDNNFMDPQLCATFACDIYKHLRASEAKKRPSTDFMETVQKDINPSMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNPMNRQKLQLLGVASMMVASKYEEICAPQVEEFCYITDNTYFKEEVLQMESAVLNYLKFEMTAPTIKCFLRRFVRAAQGVSETPSLQLECLTNYIAELSLLEYSMLCYAPSLIAASAIFLAKFILSPSTKPWNATLKHYTQYQPSDLCSCVRDLHRLCCNNPNSNLPAIREKYSQHKYKNVAKKCCPSSIPSEYFQN* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0656 498 ProSitePatterns Cyclins signature. 267 298 IPR006671 -
Amo08g0656 498 Pfam Cyclin, C-terminal domain 365 486 IPR004367 -
Amo08g0656 498 CDD CYCLIN 363 456 IPR013763 -
Amo08g0656 498 PIRSF Cyclin_A_B_D_E 1 496 IPR039361 -
Amo08g0656 498 SMART cyclin_7 272 356 IPR013763 -
Amo08g0656 498 SMART cyclin_7 369 457 IPR013763 -
Amo08g0656 498 Gene3D - 250 363 - -
Amo08g0656 498 PANTHER CYCLIN-A1-1 28 497 - -
Amo08g0656 498 SUPERFAMILY Cyclin-like 226 362 IPR036915 -
Amo08g0656 498 SMART Cyclin_C_2 365 488 IPR004367 -
Amo08g0656 498 Pfam Cyclin, N-terminal domain 236 362 IPR006671 -
Amo08g0656 498 Gene3D - 236 484 - -
Amo08g0656 498 SUPERFAMILY Cyclin-like 365 490 IPR036915 -
Amo08g0656 498 CDD CYCLIN 266 355 IPR013763 -
Amo08g0656 498 PANTHER CYCLINS 28 497 IPR039361 -
Amo08g0656 498 MobiDBLite consensus disorder prediction 1 32 - -
Amo08g0656 498 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0656 Amo-Chr8 11698517 11704470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0656 1 498 Core Cell Cycle Gene Families AT1G44110 59.524 0.0 553
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0656 K06627 - gmx:100789565 704.131