Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0653 ATGGCGCCAATCATGCAATCCTCTCAGCCTTGGGTCGAAAAATACCGACCAAAACAAGTGAAAGACGTAGCTCACCAAGACGAAGTTGTTCGTGTCCTCACCAACACTCTTGAAACTGGAAGCTGCCCCCACATGCTCTTCTATGGACCCCCCGGCACCGGAAAAACAACCACTGCTCTTGCAATAGCTCACCAGCTTTTCGGGCCTGAGCTTTACAAGTCTAGGGTGCTGGAGCTCAATGCAAGTGATGACCGTGGGATTAATGTTGTTCGCACCAAGATAAAGGATTTTGCAGCCGTCGCCGTTGGTACTAATCAGCGCAAGGGTGGTTATCCTTGCCCACCATATAAGATTATTGTCTTGGATGAGGCAGATTCAATGACTGAAGATGCTCAGAATGCCCTGAGGCGAACAATGGAAACTTACTCTAAAGTTACTCGGTTCTTTTTCATATGCAACTACATCAGCAGGATCATAGAACCACTGGCTTCAAGGTGTGCGAAATTCAGGTTCAAGCCATTGTCAGAAGAGATCATGAGCAACCGAATACTGTACATTTGCAATGAAGAAGGACTCAATCTTGATGCTAAGGCTCTTTCAACCCTGAGTTCTATCTCTCAAGGAGATCTTCGTCGGGCTATCACATACTTGCAGTCAGCAGCTCGATTATTTGGATCTTCCATTTCTTCAGAGGACCTGATTTCAGTATCTGGGGTTGTTCCAGCAGAGGTAGTGGAGGCAATTCTGAAAGCATGCAAAAGTGGAAATTTTGATTCAGCCAACAAGGAAGTAAACAATTTCATTGCAGAGGGATATCCAGCCTCTCAGATACTAACTCAGTTATTTGAGGCCATTCTTGAAGATGACATATCAGATGAACAGAAAGCAAGAATTGCCAAGAAGCTTCTAAGACGGAAATTATATAACCTTGAATTGAACCTTCAAATTTTGTAG 954 0.4434 MAPIMQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNQRKGGYPCPPYKIIVLDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMSNRILYICNEEGLNLDAKALSTLSSISQGDLRRAITYLQSAARLFGSSISSEDLISVSGVVPAEVVEAILKACKSGNFDSANKEVNNFIAEGYPASQILTQLFEAILEDDISDEQKARIAKKLLRRKLYNLELNLQIL* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0653 317 Gene3D - 176 239 - -
Amo08g0653 317 Pfam ATPase family associated with various cellular activities (AAA) 45 172 IPR003959 GO:0005524|GO:0016887
Amo08g0653 317 Gene3D - 2 173 IPR027417 -
Amo08g0653 317 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 234 IPR027417 -
Amo08g0653 317 CDD HLD_clamp_RFC 174 233 - -
Amo08g0653 317 Pfam Replication factor C C-terminal domain 241 302 IPR013748 -
Amo08g0653 317 PANTHER REPLICATION FACTOR C SUBUNIT 4 6 303 - -
Amo08g0653 317 SUPERFAMILY post-AAA+ oligomerization domain-like 240 302 IPR008921 GO:0003677|GO:0006260
Amo08g0653 317 SMART AAA_5 41 174 IPR003593 -
Amo08g0653 317 Gene3D - 240 306 - -
Amo08g0653 317 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 6 303 - -
Amo08g0653 317 CDD AAA 26 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0653 Amo-Chr8 11651543 11655765 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0653 1 302 Core DNA Replication Machinery Family AT1G21690 81.579 0.0 521
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0653 K10755 - gmx:100798331 542.347