Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0640 ATGGAGCTTGTTGATACTACAAAGATTCAACAACAACATTTTCATGTCTTGGCAGTTGATGATAGTGTCATTGATAGAAAACTCTTGGAGAGGCTCCTTAGAGATTCTTCATGCAAAGTTACATGTGTGGACTCTGGTGACAAGGCTTTGAAATATCTTGGGCTTGTTGATGATGATGATGAACATCAAAATAATAATAATAACAATAGTTCTTCTTCATCAACCTCTTCAGAATCTTCATCATTTTCTAAGTCTTCTCCTTCTCCTCACCCATTACAACAAGAGGGAATGAAAGTGAATTTGATCATGACGGATTATTGCATGCCTGGGATGAGTGGCTATGATTTACTTAAACGAGTCAAGGGATCTTCTTGGAAAGATGTTCCAGTTGTGATTATGTCATCAGAAAATGTACCTTCCAGAATCACCATGTGCTTGGAAGGAGGGGCAGAAGAGTTTCTATTGAAACCTCTTCAGTCAGAAGATTTAAAGAAGCTTCAACCCTATTTTCTGAAACCACTTGATAATAATTCAAGTGAAGAAGGAGAATCTGCTAATAGTTCTATAGATTCAGACAATGAAAATAATCTCATCAGCAACAATAATAATATTAACAATAATAATAATAATAATAATAATAATAGTATTAGCAAAAGGAAGGCTATGTCTCCTGATGAGCCTCCAGAAAGATCAAGACCCAAAATGAAAGGGTTGGAAGTGGTGTAA 726 0.3554 MELVDTTKIQQQHFHVLAVDDSVIDRKLLERLLRDSSCKVTCVDSGDKALKYLGLVDDDDEHQNNNNNNSSSSSTSSESSSFSKSSPSPHPLQQEGMKVNLIMTDYCMPGMSGYDLLKRVKGSSWKDVPVVIMSSENVPSRITMCLEGGAEEFLLKPLQSEDLKKLQPYFLKPLDNNSSEEGESANSSIDSDNENNLISNNNNINNNNNNNNNNSISKRKAMSPDEPPERSRPKMKGLEVV* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0640 241 MobiDBLite consensus disorder prediction 222 241 - -
Amo08g0640 241 SUPERFAMILY CheY-like 14 166 IPR011006 -
Amo08g0640 241 MobiDBLite consensus disorder prediction 57 94 - -
Amo08g0640 241 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 240 IPR045279 GO:0009736
Amo08g0640 241 MobiDBLite consensus disorder prediction 174 241 - -
Amo08g0640 241 CDD REC_typeA_ARR 16 166 - -
Amo08g0640 241 PANTHER TWO-COMPONENT RESPONSE REGULATOR ORR4 8 240 - -
Amo08g0640 241 SMART REC_2 14 167 IPR001789 GO:0000160
Amo08g0640 241 MobiDBLite consensus disorder prediction 174 220 - -
Amo08g0640 241 Pfam Response regulator receiver domain 77 165 IPR001789 GO:0000160
Amo08g0640 241 Gene3D - 15 218 - -
Amo08g0640 241 ProSiteProfiles Response regulatory domain profile. 15 171 IPR001789 GO:0000160
Amo08g0640 241 MobiDBLite consensus disorder prediction 65 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0640 Amo-Chr8 11445996 11449562 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0640 11 186 Response Regulator Gene Family AT3G57040 53.933 7.58e-59 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Amo08g0640 Response_reg 1.2e-14 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0640 K14492 - gmx:100801334 279.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g0640 08 11445996 11449562 Amo17g2708 17 127548704 127552492 hybridization