Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0626 ATGCAAAAAAATATATACTCCATTTACTCTCAATCTTTTCTTGACGATGTCTTAATCCATTTCTTCTTCTTCTTCTTCTTCTCTCTCTCTCTCTCTCCTCTACCTGGCACGGGCAAAACTTCGACTATTCTTGCCGTGGCACGCAAACTCTATGGTGCGCAATACCACAAAATGATTTTGGAGCTCAATGCCTCTGATGACAGAGGAATTGATGTTGTACGCCAGCAGATTCAAGATTTTGCTAGCACCCAGAGCTTATCATTTGGGTTTGCAAAGGCCTCAGTGAAATTGGTCTTGCTAGATGAAGCAGATGCCATGACAAAGGATGCCCAATTTGCATTACGTAGAGTGATTGAGAAATATACAAAAAGTACAAGGTTTGCACTTATCTGCAATCATGTAAATAAGATTATCCCTGCACTACAATCAAGGTGCACTCGATTTCGGTTTGCCCCTCTTGATGAAGTCCATGTCACTGATAGACTGAAGCATGTTATTAAAGCTGAAGGGCTTGATGTTGAAGACAGTGGCTTAGCTGCGCTTGTTCGGCTTAGCAATGGTGATATGAGAAAGGCTTTGAATATTCTTCAGTCAACGCATATGGCTTCTCAGCAGATAACAGAAGAAGCTGTATACCTGTGCACTGGAAATCCATTGCCCAAAGATATTGAGCAAATATCTTATTGGCTGCTAAATGAACAATTTTCAGAGAGTTTTAAAAGAATACATGAAATCAAGACAAGGAAAGGATTGGCCCTGGTAGATATTGTGAGAGAAGTGACAATGTTTGTCTTTAAGATTAAGATGCCTCCAGATGTCCGAGTACAGTTGATTAATGATTTGGCAGACATAGAGTACAGATTAAGTTTTGGGTGCAATGACAAGCTTCAGCTTGGTTCAGTTATCGCTACGTTTACTCGAGCCAGATCTGCACTGGTTGCTGCTGCTAAATAG 954 0.4078 MQKNIYSIYSQSFLDDVLIHFFFFFFFSLSLSPLPGTGKTSTILAVARKLYGAQYHKMILELNASDDRGIDVVRQQIQDFASTQSLSFGFAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDEVHVTDRLKHVIKAEGLDVEDSGLAALVRLSNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNEQFSESFKRIHEIKTRKGLALVDIVREVTMFVFKIKMPPDVRVQLINDLADIEYRLSFGCNDKLQLGSVIATFTRARSALVAAAK* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0626 317 Gene3D - 218 315 - -
Amo08g0626 317 SUPERFAMILY post-AAA+ oligomerization domain-like 218 308 IPR008921 GO:0003677|GO:0006260
Amo08g0626 317 CDD HLD_clamp_RFC 153 215 - -
Amo08g0626 317 Pfam Replication factor C C-terminal domain 218 303 IPR013748 -
Amo08g0626 317 CDD AAA 36 152 - -
Amo08g0626 317 PANTHER REPLICATION FACTOR C SUBUNIT 5 34 313 - -
Amo08g0626 317 Gene3D - 28 152 IPR027417 -
Amo08g0626 317 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 34 313 - -
Amo08g0626 317 Pfam ATPase family associated with various cellular activities (AAA) 32 151 IPR003959 GO:0005524|GO:0016887
Amo08g0626 317 SMART AAA_5 25 156 IPR003593 -
Amo08g0626 317 Gene3D - 155 217 - -
Amo08g0626 317 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 203 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0626 Amo-Chr8 11144251 11148894 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0626 35 317 Core DNA Replication Machinery Family AT1G77470 82.131 7.85e-173 482
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0626 K10756 - gmx:100782652 508.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g0626 08 11144251 11148894 Amo17g2723 17 128006120 128010362 hybridization