Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0622 ATGGAAGGTGATGATGGAAAACAACCAACCCACAAAGAACCATGCAATAATAATAGTAGTAACAATAATGAATTATTTGAGCAAGAGAACTTTGATTATATTCTTGCAATTAGCTTGCAAGAACAAGAGGGAGCAACATACACAACCCTAGCAACCATGGAAAGTGACGACGATGAAGAAGACGACGACGAAGATGATTATTCCTCTTTGGGCGATGAAGATGGCGATTCTGAGTATTATTTAGAAAGCCAAGACTTTGAGGAGTCAGAAACTCAGTTCCTTGAAGGTGAAGGAAGCAACTACGACGACGACGATGACGAGGGAGAAGAAGAAGAGATGGAAGAAGATGAAATTGATCCAGATGAAATGTCCTATGAAGAGTTGATTGAGTTGGGAGAAATCATAGGAGAAGAGAATAGAGGATTATCAGAAAATGAAGTGTCTTCTTGCTTATACCCTTACACTTGCAAATCTAATAGTGATGATGAAAGAATCGATCGGTGTGTAGTTTGTCAGATAGAATATGAAGAAGGTGAATCAATGGTGGCACTGGAATGTAAGCACCCTTTTCATGAAGATTGCATAACCACATGGCTTCAGATTAAGAAGGTTTGTCCAATTTGTGGCAATGAAGTTTCAACCAATAATAATAATACCAACAAGATCATGCCTAAGAATGAATAA 684 0.3816 MEGDDGKQPTHKEPCNNNSSNNNELFEQENFDYILAISLQEQEGATYTTLATMESDDDEEDDDEDDYSSLGDEDGDSEYYLESQDFEESETQFLEGEGSNYDDDDDEGEEEEMEEDEIDPDEMSYEELIELGEIIGEENRGLSENEVSSCLYPYTCKSNSDDERIDRCVVCQIEYEEGESMVALECKHPFHEDCITTWLQIKKVCPICGNEVSTNNNNTNKIMPKNE* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0622 227 Pfam Ring finger domain 167 208 IPR001841 -
Amo08g0622 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 153 225 IPR013083 -
Amo08g0622 227 MobiDBLite consensus disorder prediction 1 26 - -
Amo08g0622 227 ProSiteProfiles Zinc finger RING-type profile. 168 208 IPR001841 -
Amo08g0622 227 MobiDBLite consensus disorder prediction 46 123 - -
Amo08g0622 227 MobiDBLite consensus disorder prediction 12 26 - -
Amo08g0622 227 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 21 217 IPR033276 GO:0004842|GO:0016567|GO:0046621
Amo08g0622 227 SUPERFAMILY RING/U-box 167 215 - -
Amo08g0622 227 SMART ring_2 168 208 IPR001841 -
Amo08g0622 227 MobiDBLite consensus disorder prediction 53 123 - -
Amo08g0622 227 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED-LIKE 21 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0622 Amo-Chr8 11081882 11082995 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0622 115 212 C3H Transcription Factor Family AT3G63530 48.000 6.01e-28 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0622 K19045 - gmx:100526881 194.897