Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0608 ATGCTTGGTGTTCGCTGCTGCCATCGTCCCCCTCGTGCTATCGTCGAGCGTCGGTCGTTGACTAGGAGCTCCCCGTCGCTGTCGCCTGGCCGCCAGACATCTGCACGCCCTTTATGGTGGTGCAATGGGATTGAGTTCTTGCTGTTTATATATGGTGGGGCTCCATACCAGACTCAGGAGAGTAAGCTTAGGAGAGGTGTTGATATTGTTGTTGGCACTCCAGGTCGCGTGAAAGATCATATAGAGAGGGAAAATGTTGACCTGAGCCAGCTAAAGTTCCGTGTCCTTGATGAGGCTAATGAGATGCTCAGAATGGGTTTTGTTGAAGAGGTGGAACTAATTCTAGGCAAGGTACAAGATGTTAGCAAAGTTCAGACACTTCTTTTCAGTGCTACTTTGCCAGAATTGGGTTAA 414 0.4928 MLGVRCCHRPPRAIVERRSLTRSSPSLSPGRQTSARPLWWCNGIEFLLFIYGGAPYQTQESKLRRGVDIVVGTPGRVKDHIERENVDLSQLKFRVLDEANEMLRMGFVEEVELILGKVQDVSKVQTLLFSATLPELG* 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0608 137 PANTHER DEAD (ASP-GLU-ALA-ASP) BOX HELICASE 21 48 135 - -
Amo08g0608 137 Gene3D - 28 136 IPR027417 -
Amo08g0608 137 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 48 135 IPR027417 -
Amo08g0608 137 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 48 135 - -
Amo08g0608 137 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 24 137 IPR014001 -
Amo08g0608 137 CDD DEADc 50 135 - -
Amo08g0608 137 Pfam DEAD/DEAH box helicase 47 134 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0608 Amo-Chr8 10900467 10901407 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0608 52 134 Eukaryotic Initiation Factors Gene Family AT1G72730 43.373 5.91e-13 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0608 K16911 - cpap:110823148 150.984