Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0602 ATGAGTTATTTTGCCAACATTTTGAGGAACGATCTTCAAACCAAGAAAATGGACAAGAAGTTATGCCTCTTGTTCATTTTCTCAGCATCAATTTTGTTCATTGTTGGAGCTGAGCCAGTGGAAGATAAACAAGCCTTGCTTGATTTCCTTCACAACATGAACCACCCTTATAATCTCAACTGGAATGAGAARTCTTCTGTATGCACAAGCTGGAGAGGAGTYACATGCAACGCCGGCCGGTCCAGAGTTATCGCYCTCCGGTTGCCAGCGGCCGGATTAAGTGGTCAAATCCCAAACAACACTCTTGGTCAKCTTTCAGKGCTTCAGATTCTGAGTCTTCATTCAAATGGTATAACTGGTCCTTTCCCTAATGATTTCTCTGAGCTGAAGAACTTAACAAGCCTCTATCTCCAATCCAACAAGATTTCTGGCCCTCTGCCATTGAATTTCTCAGTTTGGAATAGTCTTACAATATTGAATTTATCTAACAACTTTTTCAATGGTACCATACCTTTTTCAATTTCGAATATGACTCATCTCGAATCATTAATCCTTGCCAACAATTCACTTTCTGGTGAAATACCTGATCTCAATATTCCTAGTCTCAAAGAGCTTGATTTGGCAAACAATAATCTTAGTGGTGTTGTTCCTAAATCCCTTCTTAGATTTCCAATTAGGGACTTTGCTGGTAACAATAATCTTACCTATGGAAATGCCCTTTCACCTGCAATTCCCCTGCAACCGCCCAATGATCAACCAGCTAAGAAGAAACACAACAGGATCAGCGAGCAAACGCTGTTGGCTATCATAATTGGTGCTTGTGTGCTTGGATTTGCTGTGGTTGCAGCCTTCATGATTGCGTGCATGTATGAGAAAAGCAACGAAAATGAGCTACCCGTTGAGTCCAAGAAAAAAGAAGTTCCTCTGAAGAAGCAATCTTCTGATAGCCAAGAGTCTCAGGACAAGAACAAGATTGTGTTCTTTGAAGGTTGCAGTCTTGCATTTGACTTAGAGGATCTACTGAGAGCTTCTGCTGAGATTCTAGGAAAGGGGACATTCGGCATGACATATAAGGCTTCTCTAGATGAGAATACCACAGTGGTGGTGAAGAGYTTGAAAGAGGTTACAGCTGGAAAAAGAGAATTTGAACAGCAAATGGAAATTGTGGGGAGAATTAAGCATGACAATGTGGATGCATTAAGGGCATATTACTACTCAAAGGAGGAGAAACTCATAGTATATGATTTCTATCAACAAGGCAGCGTTTCTGCATTGTTGCATGGAAAAAGAGGGGAAGGAAGAATCCCTTTAGACTGGGAGAGCCGTCTAAGAATCGCAATAGGCGCAGCAAGAGCCATTGCTCACATCCATGCTCAACACGGAGGGAAACTAGTTCATGGAAACATAAAAGCCTCAAACATCTTCCTCAACTCACAAGGATACGGTTGTGTATCGGACACRGGTTTGGCAACCCTGATGAGTCCATTGCCTGCACCTGCAACACGTGCTGCTGGATACCGTGCCCCAGAAGTAACTGACACCCGAAAATCAACACATGCATCTGATGTCTATGCTTTCGGGGTCCTAGTACTCGAGCTTCTGACAGGGAAGTCACCAGTACCTGCTGCCGGAGGCGAGGAAGTTATGCATTTGGTTAGATGGGTGAATTCTGTGGTCAGAGAAGAATGGACTGCAGAGGTGTTTGATGTGGAGCTTCTGAGGTATCCYAATATAGAGGAAGAAATGGTGGAGATGCTGCAAATAGGGATGGCTTGTGCCTCAAGAATACCGGATCAGAGACCGAAKATGACAGAGGTGGTGAGAATGATGGAGGAAATTCGTCGTGTAAACACTGGAAATCCACCTTCCACTGGATCTAGATCAGAAGTTTCTACTCCAACAACTTATGCAGTTGACATGATGGTGGCTTCTACATCGGTCCCACAGTGA 1950 0.4328 MSYFANILRNDLQTKKMDKKLCLLFIFSASILFIVGAEPVEDKQALLDFLHNMNHPYNLNWNEKSSVCTSWRGVTCNAGRSRVIALRLPAAGLSGQIPNNTLGXLSXLQILSLHSNGITGPFPNDFSELKNLTSLYLQSNKISGPLPLNFSVWNSLTILNLSNNFFNGTIPFSISNMTHLESLILANNSLSGEIPDLNIPSLKELDLANNNLSGVVPKSLLRFPIRDFAGNNNLTYGNALSPAIPLQPPNDQPAKKKHNRISEQTLLAIIIGACVLGFAVVAAFMIACMYEKSNENELPVESKKKEVPLKKQSSDSQESQDKNKIVFFEGCSLAFDLEDLLRASAEILGKGTFGMTYKASLDENTTVVVKSLKEVTAGKREFEQQMEIVGRIKHDNVDALRAYYYSKEEKLIVYDFYQQGSVSALLHGKRGEGRIPLDWESRLRIAIGAARAIAHIHAQHGGKLVHGNIKASNIFLNSQGYGCVSDTGLATLMSPLPAPATRAAGYRAPEVTDTRKSTHASDVYAFGVLVLELLTGKSPVPAAGGEEVMHLVRWVNSVVREEWTAEVFDVELLRYPNIEEEMVEMLQIGMACASRIPDQRPXMTEVVRMMEEIRRVNTGNPPSTGSRSEVSTPTTYAVDMMVASTSVPQ* 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0602 649 Pfam Leucine Rich Repeat 155 176 IPR001611 GO:0005515
Amo08g0602 649 Pfam Leucine Rich Repeat 201 221 IPR001611 GO:0005515
Amo08g0602 649 Gene3D Transferase(Phosphotransferase) domain 1 418 625 - -
Amo08g0602 649 ProSiteProfiles Leucine-rich repeat profile. 201 222 IPR001611 GO:0005515
Amo08g0602 649 ProSiteProfiles Protein kinase domain profile. 342 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo08g0602 649 Pfam Leucine rich repeat N-terminal domain 41 77 IPR013210 -
Amo08g0602 649 Gene3D Phosphorylase Kinase; domain 1 308 416 - -
Amo08g0602 649 PANTHER OS05G0588300 PROTEIN 26 640 - -
Amo08g0602 649 SUPERFAMILY L domain-like 42 222 - -
Amo08g0602 649 ProSitePatterns Protein kinases ATP-binding region signature. 348 379 IPR017441 GO:0005524
Amo08g0602 649 PANTHER LRR RECEPTOR-LIKE KINASE 26 640 - -
Amo08g0602 649 Gene3D Ribonuclease Inhibitor 40 247 IPR032675 -
Amo08g0602 649 SUPERFAMILY Protein kinase-like (PK-like) 346 611 IPR011009 -
Amo08g0602 649 Pfam Protein tyrosine and serine/threonine kinase 346 608 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0602 Amo-Chr8 10829370 10832766 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0602 31 634 Receptor kinase-like Gene Family AT4G23740 55.859 0.0 677
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Amo08g0602 PK_Tyr_Ser-Thr 9.8e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0602 - - gmx:100809359 909.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g0602 08 10829370 10832766 Amo17g2559 17 124437472 124440407 hybridization