Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0574 ATGTCTAACACTGCTGGTCAAATCATCAAGTGCCGAGCTGCGGTTGCATGGGAGGCAGGGAAGCCATTGGTGATTGAAGAAGTGGAGGTTGCGCCACCTAAGGCCGGTGAAGTCCGTTTGAAGATCCTCTACACCTCACTTTGCCACACCGATGTTTACTTCTGGGAAGCCAAGGGCCAGACTCCATTATTTCCTCGGATATTTGGTCATGAAGCTGGAGGGATTGTGGAGAGTGTAGGAGAGGGAGTGACTCATCTGAAACCAGGTGACCATGCCCTCCCTGTGTTCACCGGAGAGTGTGGCGAATGCCCTCACTGCAAGTCAGAGGAGAGCAACATGTGTGACCTTCTCAGGATCAACACTGACAGGGGTGTCATGATCCATGATCAAGAATCAAGATTCTCCATTAAGGGAAAACCAATTTACCACTTTGTTGGGACCTCCACATTCAGTGAATACACTGTGGTTCATGCTGGATGTGTTGCAAAGATCAACCCTGAAGCACCACTTGACAAAGTTTGTGTTCTCAGCTGTGGAATCTGCACAGGTCTTGGTGCCACTATCAATGTTGCAAAACCAAAACCTGGTTCTTCTGTTGCTGTTTTTGGACTCGGAGCTGTTGGTCTTGCTGCTGCTGAAGGGGCAAGGATTTCTGGTGCATCAAGAATCATTGGGGTTGATTTAGTTTCCAGCCGATTCGAATTAGCTAAGAAGTTTGGGGTTAATGAATTTGTGAACCCAAAAGATCATAACAAACCTGTACAAGAGGTAATTGCTGAAATGACCAATGGAGGTGTGGATCGTTCTGTTGAATGTACTGGCAGCATCCAAGCTATGATCTCAGCATTTGAATGTGTCCATGATGGTTGGGGTGTTGCTGTTCTTGTTGGTGTGCCAAGCAAAGATGATGCTTTCAAAACTCATCCTACGAACTTCTTGAATGAGAGGACTCTCAAGGGTACCTTCTATGGTAACTACAAACCCCGAACCGATCTTCCTAATGTTGTGGAGAAGTACATGAGAGGGGAGTTGGAACTTGAGAAATTCATCACTCACACTGTTCCGTTCTCAGAGATTAACAAGGCTTTTGATTTGATGCTGAAAGGAGAGTCCATCAGGTGCATCATTCGGATGGACGAATAA 1143 0.4637 MSNTAGQIIKCRAAVAWEAGKPLVIEEVEVAPPKAGEVRLKILYTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTHLKPGDHALPVFTGECGECPHCKSEESNMCDLLRINTDRGVMIHDQESRFSIKGKPIYHFVGTSTFSEYTVVHAGCVAKINPEAPLDKVCVLSCGICTGLGATINVAKPKPGSSVAVFGLGAVGLAAAEGARISGASRIIGVDLVSSRFELAKKFGVNEFVNPKDHNKPVQEVIAEMTNGGVDRSVECTGSIQAMISAFECVHDGWGVAVLVGVPSKDDAFKTHPTNFLNERTLKGTFYGNYKPRTDLPNVVEKYMRGELELEKFITHTVPFSEINKAFDLMLKGESIRCIIRMDE* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0574 380 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 169 343 IPR036291 -
Amo08g0574 380 Gene3D - 19 370 - -
Amo08g0574 380 CDD alcohol_DH_plants 9 377 - -
Amo08g0574 380 Pfam Alcohol dehydrogenase GroES-like domain 36 163 IPR013154 -
Amo08g0574 380 SUPERFAMILY GroES-like 4 186 IPR011032 -
Amo08g0574 380 SUPERFAMILY GroES-like 328 377 IPR011032 -
Amo08g0574 380 PANTHER ALCOHOL DEHYDROGENASE 4 378 - -
Amo08g0574 380 PANTHER ALCOHOL DEHYDROGENASE-RELATED 4 378 - -
Amo08g0574 380 Pfam Zinc-binding dehydrogenase 206 336 IPR013149 -
Amo08g0574 380 Gene3D - 183 321 - -
Amo08g0574 380 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 69 83 IPR002328 GO:0008270|GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0574 Amo-Chr8 10486526 10489221 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0574 37 370 Monolignol Biosynthesis Gene Families AT1G72680 25.223 2.76e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0574 K18857 - gmx:100783858 719.539
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g0574 08 10486526 10489221 Amo17g2607 17 125370209 125373964 hybridization
Amo16g3905 16 150829915 150831099 Amo08g0574 08 10486526 10489221 PCT
Amo08g0574 08 10486526 10489221 Amo16g3905 16 150829915 150831099 PCT