Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g0556 ATGGAGGATTCTTCTAATAATAACAATACTTGTGAGGACACTAAGATTTGTCCTCGCGGTCACTGGCGACCCGCCGAGGATGAAAAGCTTCGCCAACTTGTTGAACAATATGGTGCTCAGAATTGGAATTCCATTGCTGAAAAACTTCAAGGAAGATCAGGGAAAAGTTGTAGATTAAGGTGGTTCAATCAGCTAGATCCAAGAATCAACAGGAGGCCGTTCACGGAGGGGGAGGAAGAGCGGTTACTGGCGGCGCACCGCATTCACGGCAACAAGTGGGCCCTGATAGCGAGGCTATTTCCGGGAAGAACAGATAACGCCGTCAAGAATCACTGGCACGTGATCATGGCAAGAAAGCAAAGAGAGCAATCCAAGATTTGTGGCAAAAGAACCTTCCAAGACATGATGATTTTCAATAATAACAACAACGATTCCAATTCTTCTTCTTCTTCCAGTAACATCATCAAGAGACCAGCAAGAGTAATCGGGTTAGAATATTCCAGATTCTTCGATTTTCGCAACCTCGATAGCAATAAAGCTTCTACTTCTTGGAATTTCGCATCTTCTGTTCCGCCAGTAACTGATTCTTTTAGAAAAGGAGGAGGAGGAGGAAAAGACTATTTCACCATCAACGGTTCCAATATTTATCTTCCAGAAGGTTCTAGAACCTCCGATAGATTCTATTGCAGAAGGATCGTTCCGAATCCCTTCGCCTTCAAGGGTAGTTCTACGGAGAAGGAGAAAGAAGAAGATCATGAACCTAAAAATGAAGTTCCTTTCATTGATTTTTTGGGCGTCGGTGTCTCTTCTTCGTAG 816 0.4363 MEDSSNNNNTCEDTKICPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEGEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSKICGKRTFQDMMIFNNNNNDSNSSSSSSNIIKRPARVIGLEYSRFFDFRNLDSNKASTSWNFASSVPPVTDSFRKGGGGGKDYFTINGSNIYLPEGSRTSDRFYCRRIVPNPFAFKGSSTEKEKEEDHEPKNEVPFIDFLGVGVSSS* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g0556 271 SMART sant 70 118 IPR001005 -
Amo08g0556 271 SMART sant 18 67 IPR001005 -
Amo08g0556 271 ProSiteProfiles Myb-like domain profile. 19 65 IPR001005 -
Amo08g0556 271 Gene3D - 73 134 - -
Amo08g0556 271 ProSiteProfiles Myb-like domain profile. 66 116 IPR001005 -
Amo08g0556 271 PANTHER MYB PROTEIN-RELATED 6 269 - -
Amo08g0556 271 Gene3D - 19 70 - -
Amo08g0556 271 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 65 IPR017930 -
Amo08g0556 271 SUPERFAMILY Homeodomain-like 18 112 IPR009057 -
Amo08g0556 271 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 120 IPR017930 -
Amo08g0556 271 CDD SANT 22 63 IPR001005 -
Amo08g0556 271 PANTHER TRANSCRIPTION FACTOR MYB56 6 269 - -
Amo08g0556 271 CDD SANT 73 113 IPR001005 -
Amo08g0556 271 Pfam Myb-like DNA-binding domain 22 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g0556 Amo-Chr8 10177221 10178337 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g0556 16 271 MYB Transcription Factor Family AT1G17950 45.522 3.58e-67 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo08g0556 Myb_DNA-bind_6 1.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g0556 K09422 - gmx:100817328 318.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g0556 08 10177221 10178337 Amo17g2618 17 125548690 125549890 hybridization